Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZWN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZWN entry

There are 20 chains in PDB entry 5ZWN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	A -9	A 12
P	A 1	U 565
Q	MET 1	GLY 188
R	THR 2	VAL 196
S	ALA 3	ARG 148
T	ASP 2	PHE 540
U	ALA 43	GLU 627
V	ASN 289	PHE 522
W	PHE 45	GLU 293
a	LYS 3	PRO 133
b	MET 1	SER 119
c	ARG 8	PRO 108
d	GLY 5	ARG 96
e	MET 10	SER 92
f	PRO 12	GLU 83
g	VAL 2	ALA 76
X	ASP 3	ASN 51
Y	MET 4	LYS 241
x	ALA 102	ALA 150
y	ASN 173	VAL 578

There are119 helices in PDB entry 5ZWN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Q	9	14	Right-handed alpha
Helix 2	AA2	Q	31	35	Right-handed 310
Helix 3	AA3	Q	45	59	Right-handed alpha
Helix 4	AA4	Q	68	90	Right-handed alpha
Helix 5	AA5	Q	104	106	Right-handed 310
Helix 6	AA6	Q	119	129	Right-handed alpha
Helix 7	AA7	Q	157	171	Right-handed alpha
Helix 8	AA8	R	17	27	Right-handed alpha
Helix 9	AA9	R	27	48	Right-handed alpha
Helix 10	AB1	R	60	69	Right-handed alpha
Helix 11	AB2	R	79	99	Right-handed alpha
Helix 12	AB3	R	103	109	Right-handed alpha
Helix 13	AB4	R	114	119	Right-handed alpha
Helix 14	AB5	R	127	135	Right-handed alpha
Helix 15	AB6	R	183	187	Right-handed 310
Helix 16	AB7	S	15	28	Right-handed alpha
Helix 17	AB8	S	83	95	Right-handed alpha
Helix 18	AB9	S	115	125	Right-handed alpha
Helix 19	AC1	S	133	148	Right-handed alpha
Helix 20	AC2	T	3	9	Right-handed alpha
Helix 21	AC3	T	10	23	Right-handed alpha
Helix 22	AC4	T	24	26	Right-handed 310
Helix 23	AC5	T	27	41	Right-handed alpha
Helix 24	AC6	T	49	67	Right-handed alpha
Helix 25	AC7	T	70	84	Right-handed alpha
Helix 26	AC8	T	86	101	Right-handed alpha
Helix 27	AC9	T	105	120	Right-handed alpha
Helix 28	AD1	T	122	138	Right-handed alpha
Helix 29	AD2	T	143	158	Right-handed alpha
Helix 30	AD3	T	161	172	Right-handed alpha
Helix 31	AD4	T	179	192	Right-handed alpha
Helix 32	AD5	T	195	202	Right-handed 310
Helix 33	AD6	T	204	211	Right-handed alpha
Helix 34	AD7	T	222	255	Right-handed alpha
Helix 35	AD8	T	256	259	Right-handed 310
Helix 36	AD9	T	272	290	Right-handed alpha
Helix 37	AE1	T	291	304	Right-handed alpha
Helix 38	AE2	T	310	322	Right-handed alpha
Helix 39	AE3	T	326	341	Right-handed alpha
Helix 40	AE4	T	344	359	Right-handed alpha
Helix 41	AE5	T	360	375	Right-handed alpha
Helix 42	AE6	T	384	403	Right-handed alpha
Helix 43	AE7	T	407	411	Right-handed 310
Helix 44	AE8	T	417	429	Right-handed alpha
Helix 45	AE9	T	430	434	Right-handed 310
Helix 46	AF1	T	437	443	Right-handed alpha
Helix 47	AF2	T	444	446	Right-handed 310
Helix 48	AF3	T	449	460	Right-handed alpha
Helix 49	AF4	T	462	467	Right-handed alpha
Helix 50	AF5	T	469	475	Right-handed alpha
Helix 51	AF6	T	475	488	Right-handed alpha
Helix 52	AF7	T	493	504	Right-handed alpha
Helix 53	AF8	T	505	509	Right-handed 310
Helix 54	AF9	T	513	529	Right-handed alpha
Helix 55	AG1	T	532	540	Right-handed alpha
Helix 56	AG2	U	44	62	Right-handed alpha
Helix 57	AG3	U	66	84	Right-handed alpha
Helix 58	AG4	U	87	102	Right-handed alpha
Helix 59	AG5	U	103	115	Right-handed alpha
Helix 60	AG6	U	121	131	Right-handed alpha
Helix 61	AG7	U	138	155	Right-handed alpha
Helix 62	AG8	U	160	173	Right-handed alpha
Helix 63	AG9	U	176	189	Right-handed alpha
Helix 64	AH1	U	194	206	Right-handed alpha
Helix 65	AH2	U	213	240	Right-handed alpha
Helix 66	AH3	U	247	252	Right-handed alpha
Helix 67	AH4	U	252	265	Right-handed alpha
Helix 68	AH5	U	270	284	Right-handed alpha
Helix 69	AH6	U	289	303	Right-handed alpha
Helix 70	AH7	U	306	321	Right-handed alpha
Helix 71	AH8	U	327	340	Right-handed alpha
Helix 72	AH9	U	344	362	Right-handed alpha
Helix 73	AI1	U	366	380	Right-handed alpha
Helix 74	AI2	U	388	412	Right-handed alpha
Helix 75	AI3	U	420	425	Right-handed alpha
Helix 76	AI4	U	429	444	Right-handed alpha
Helix 77	AI5	U	447	460	Right-handed alpha
Helix 78	AI6	U	461	466	Right-handed alpha
Helix 79	AI7	U	467	481	Right-handed alpha
Helix 80	AI8	U	483	493	Right-handed alpha
Helix 81	AI9	U	501	520	Right-handed alpha
Helix 82	AJ1	U	521	527	Right-handed alpha
Helix 83	AJ2	U	539	544	Right-handed alpha
Helix 84	AJ3	U	565	570	Right-handed alpha
Helix 85	AJ4	U	591	596	Right-handed alpha
Helix 86	AJ5	V	325	334	Right-handed alpha
Helix 87	AJ6	V	357	368	Right-handed alpha
Helix 88	AJ7	V	385	399	Right-handed alpha
Helix 89	AJ8	V	497	518	Right-handed alpha
Helix 90	AJ9	W	46	58	Right-handed alpha
Helix 91	AK1	W	78	94	Right-handed alpha
Helix 92	AK2	W	121	142	Right-handed alpha
Helix 93	AK3	W	207	222	Right-handed alpha
Helix 94	AK4	W	230	251	Right-handed alpha
Helix 95	AK5	W	253	257	Right-handed 310
Helix 96	AK6	W	262	293	Right-handed alpha
Helix 97	AK7	a	54	59	Right-handed alpha
Helix 98	AK8	a	104	132	Right-handed alpha
Helix 99	AK9	b	3	8	Right-handed alpha
Helix 100	AL1	b	58	67	Right-handed alpha
Helix 101	AL2	b	102	107	Right-handed alpha
Helix 102	AL3	b	109	119	Right-handed alpha
Helix 103	AL4	c	14	28	Right-handed alpha
Helix 104	AL5	c	31	40	Right-handed alpha
Helix 105	AL6	d	6	14	Right-handed alpha
Helix 106	AL7	d	75	85	Right-handed 310
Helix 107	AL8	e	12	23	Right-handed alpha
Helix 108	AL9	f	14	22	Right-handed alpha
Helix 109	AM1	X	8	14	Right-handed alpha
Helix 110	AM2	X	34	51	Right-handed alpha
Helix 111	AM3	Y	6	19	Right-handed alpha
Helix 112	AM4	Y	73	87	Right-handed alpha
Helix 113	AM5	Y	91	121	Right-handed alpha
Helix 114	AM6	Y	124	146	Right-handed alpha
Helix 115	AM7	Y	169	196	Right-handed alpha
Helix 116	AM8	Y	212	222	Right-handed alpha
Helix 117	AM9	Y	223	241	Right-handed alpha
Helix 118	AN1	x	103	108	Right-handed alpha
Helix 119	AN2	x	114	150	Right-handed alpha

There are 14 sheets in PDB entry 5ZWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	133	140	first strand
Strand 2	Q	147	155	anti-parallel
Strand 3	Q	108	112	anti-parallel
Strand 4	Q	179	185	anti-parallel
Strand 5	Q	174	176	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	3	5	first strand
Strand 2	R	12	14	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	179	180	first strand
Strand 2	V	294	295	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	5	first strand
Strand 2	S	78	81	anti-parallel
Strand 3	S	62	66	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	577	578	first strand
Strand 2	U	614	615	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	582	583	first strand
Strand 2	U	605	606	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	351	353	first strand
Strand 2	V	315	318	anti-parallel
Strand 3	V	379	382	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	444	446	first strand
Strand 2	V	493	495	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	69	75	first strand
Strand 2	W	112	118	anti-parallel
Strand 3	W	98	103	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	157	164	first strand
Strand 2	W	198	206	anti-parallel
Strand 3	W	187	189	anti-parallel

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There are 23 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	79	83	first strand
Strand 2	b	38	46	anti-parallel
Strand 3	b	24	32	anti-parallel
Strand 4	b	14	19	anti-parallel
Strand 5	b	92	96	anti-parallel
Strand 6	c	84	96	anti-parallel
Strand 7	c	67	79	anti-parallel
Strand 8	c	53	60	anti-parallel
Strand 9	c	44	48	anti-parallel
Strand 10	c	101	106	anti-parallel
Strand 11	f	68	73	anti-parallel
Strand 12	f	51	59	anti-parallel
Strand 13	f	37	45	anti-parallel
Strand 14	f	26	31	anti-parallel
Strand 15	f	78	82	anti-parallel
Strand 16	e	76	82	anti-parallel
Strand 17	e	52	61	anti-parallel
Strand 18	e	37	46	anti-parallel
Strand 19	e	26	31	anti-parallel
Strand 20	e	87	91	anti-parallel
Strand 21	g	60	63	anti-parallel
Strand 22	g	38	45	anti-parallel
Strand 23	g	55	56	anti-parallel

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There are 18 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	79	83	first strand
Strand 2	b	38	46	anti-parallel
Strand 3	b	85	87	anti-parallel
Strand 4	a	92	97	anti-parallel
Strand 5	a	19	24	anti-parallel
Strand 6	a	28	33	anti-parallel
Strand 7	a	44	52	anti-parallel
Strand 8	a	78	87	anti-parallel
Strand 9	d	69	73	anti-parallel
Strand 10	d	18	23	anti-parallel
Strand 11	d	28	36	anti-parallel
Strand 12	d	42	50	anti-parallel
Strand 13	d	56	64	anti-parallel
Strand 14	g	68	73	anti-parallel
Strand 15	g	14	19	anti-parallel
Strand 16	g	25	32	anti-parallel
Strand 17	g	38	45	anti-parallel
Strand 18	g	55	56	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	20	21	first strand
Strand 2	X	4	7	anti-parallel
Strand 3	X	29	32	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	199	200	first strand
Strand 2	Y	207	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZWN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZWN