Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZXD entry

There are 2 chains in PDB entry 5ZXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2VAL 542
B
 ALA 3HIS 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 5ZXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 53Right-handed alpha
Helix 2
AA2
A
75 82Right-handed alpha
Helix 3
AA3
A
126 140Right-handed alpha
Helix 4
AA4
A
143 148Right-handed alpha
Helix 5
AA5
A
150 154Right-handed 310
Helix 6
AA6
A
155 171Right-handed alpha
Helix 7
AA7
A
185 198Right-handed alpha
Helix 8
AA8
A
209 217Right-handed alpha
Helix 9
AA9
A
234 266Right-handed alpha
Helix 10
AB1
A
365 375Right-handed alpha
Helix 11
AB2
A
396 401Right-handed alpha
Helix 12
AB3
A
408 418Right-handed alpha
Helix 13
AB4
A
420 431Right-handed alpha
Helix 14
AB5
A
434 440Right-handed 310
Helix 15
AB6
A
441 445Right-handed 310
Helix 16
AB7
A
446 461Right-handed alpha
Helix 17
AB8
A
476 490Right-handed alpha
Helix 18
AB9
A
500 507Right-handed alpha
Helix 19
AC1
A
525 537Right-handed alpha
Helix 20
AC2
B
43 53Right-handed alpha
Helix 21
AC3
B
77 84Right-handed alpha
Helix 22
AC4
B
84 106Right-handed alpha
Helix 23
AC5
B
109 122Right-handed alpha
Helix 24
AC6
B
122 140Right-handed alpha
Helix 25
AC7
B
143 148Right-handed alpha
Helix 26
AC8
B
150 154Right-handed 310
Helix 27
AC9
B
155 171Right-handed alpha
Helix 28
AD1
B
180 184Right-handed 310
Helix 29
AD2
B
185 198Right-handed alpha
Helix 30
AD3
B
209 217Right-handed alpha
Helix 31
AD4
B
234 252Right-handed alpha
Helix 32
AD5
B
365 374Right-handed alpha
Helix 33
AD6
B
396 403Right-handed alpha
Helix 34
AD7
B
408 418Right-handed alpha
Helix 35
AD8
B
420 431Right-handed alpha
Helix 36
AD9
B
435 440Right-handed 310
Helix 37
AE1
B
441 445Right-handed 310
Helix 38
AE2
B
446 462Right-handed alpha
Helix 39
AE3
B
476 490Right-handed alpha
Helix 40
AE4
B
500 507Right-handed alpha
Helix 41
AE5
B
525 537Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5ZXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 15first strand
Strand 2
A
18 28anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
174 178parallel
Strand 3
A
202 206parallel
Strand 4
A
33 37parallel
Strand 5
A
219 224parallel
Strand 6
A
227 232anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 350first strand
Strand 2
A
327 334anti-parallel
Strand 3
A
381 386anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
465 469parallel
Strand 3
A
493 497parallel
Strand 4
A
355 359parallel
Strand 5
A
510 515parallel
Strand 6
A
518 522anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 15first strand
Strand 2
B
18 28anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
174 178parallel
Strand 3
B
202 206parallel
Strand 4
B
33 37parallel
Strand 5
B
219 224parallel
Strand 6
B
227 232anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 350first strand
Strand 2
B
327 334anti-parallel
Strand 3
B
381 386anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 395first strand
Strand 2
B
465 469parallel
Strand 3
B
493 497parallel
Strand 4
B
355 359parallel
Strand 5
B
510 515parallel
Strand 6
B
518 521anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il