Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZY9 entry

There are 3 chains in PDB entry 5ZY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLU 400
D	MET 1	GLU 400
E	HIS 3	GLU 400

There are 50 helices in PDB entry 5ZY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	26	47	Right-handed alpha
Helix 2	AA2	C	60	67	Right-handed alpha
Helix 3	AA3	C	67	72	Right-handed alpha
Helix 4	AA4	C	73	76	Right-handed 310
Helix 5	AA5	C	92	101	Right-handed alpha
Helix 6	AA6	C	125	129	Right-handed 310
Helix 7	AA7	C	148	150	Right-handed 310
Helix 8	AA8	C	151	171	Right-handed alpha
Helix 9	AA9	C	188	207	Right-handed alpha
Helix 10	AB1	C	247	253	Right-handed alpha
Helix 11	AB2	C	278	291	Right-handed alpha
Helix 12	AB3	C	295	299	Right-handed 310
Helix 13	AB4	C	309	311	Right-handed 310
Helix 14	AB5	C	312	326	Right-handed alpha
Helix 15	AB6	C	338	349	Right-handed alpha
Helix 16	AB7	C	358	365	Right-handed alpha
Helix 17	AB8	C	382	396	Right-handed alpha
Helix 18	AB9	D	26	47	Right-handed alpha
Helix 19	AC1	D	60	67	Right-handed alpha
Helix 20	AC2	D	67	72	Right-handed alpha
Helix 21	AC3	D	73	76	Right-handed 310
Helix 22	AC4	D	92	101	Right-handed alpha
Helix 23	AC5	D	125	129	Right-handed 310
Helix 24	AC6	D	148	150	Right-handed 310
Helix 25	AC7	D	151	171	Right-handed alpha
Helix 26	AC8	D	188	208	Right-handed alpha
Helix 27	AC9	D	247	253	Right-handed alpha
Helix 28	AD1	D	278	291	Right-handed alpha
Helix 29	AD2	D	309	311	Right-handed 310
Helix 30	AD3	D	312	326	Right-handed alpha
Helix 31	AD4	D	338	349	Right-handed alpha
Helix 32	AD5	D	358	363	Right-handed alpha
Helix 33	AD6	D	382	396	Right-handed alpha
Helix 34	AD7	E	26	47	Right-handed alpha
Helix 35	AD8	E	60	67	Right-handed alpha
Helix 36	AD9	E	67	72	Right-handed alpha
Helix 37	AE1	E	73	76	Right-handed 310
Helix 38	AE2	E	92	101	Right-handed alpha
Helix 39	AE3	E	106	110	Right-handed 310
Helix 40	AE4	E	125	129	Right-handed 310
Helix 41	AE5	E	148	150	Right-handed 310
Helix 42	AE6	E	151	170	Right-handed alpha
Helix 43	AE7	E	188	207	Right-handed alpha
Helix 44	AE8	E	247	253	Right-handed alpha
Helix 45	AE9	E	278	290	Right-handed alpha
Helix 46	AF1	E	309	311	Right-handed 310
Helix 47	AF2	E	312	326	Right-handed alpha
Helix 48	AF3	E	338	349	Right-handed alpha
Helix 49	AF4	E	358	365	Right-handed alpha
Helix 50	AF5	E	382	396	Right-handed alpha

There are 21 sheets in PDB entry 5ZY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	24	25	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	112	116	parallel
Strand 3	C	142	147	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	242	246	anti-parallel
Strand 6	C	225	231	anti-parallel
Strand 7	C	173	179	anti-parallel
Strand 8	C	213	215	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	112	116	parallel
Strand 3	C	142	147	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	242	246	anti-parallel
Strand 6	C	225	231	anti-parallel
Strand 7	C	237	238	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	84	88	anti-parallel
Strand 3	C	78	81	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	257	258	parallel
Strand 3	C	265	266	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	137	139	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	333	first strand
Strand 2	C	303	307	parallel
Strand 3	C	353	357	parallel
Strand 4	C	366	371	anti-parallel
Strand 5	C	376	381	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	24	25	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	112	116	parallel
Strand 3	D	142	147	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	242	246	anti-parallel
Strand 6	D	225	231	anti-parallel
Strand 7	D	173	179	anti-parallel
Strand 8	D	213	215	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	112	116	parallel
Strand 3	D	142	147	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	242	246	anti-parallel
Strand 6	D	225	231	anti-parallel
Strand 7	D	237	238	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	84	88	anti-parallel
Strand 3	D	78	81	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	137	139	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	265	266	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	333	first strand
Strand 2	D	303	307	parallel
Strand 3	D	353	357	parallel
Strand 4	D	366	371	anti-parallel
Strand 5	D	376	381	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	24	25	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	112	116	parallel
Strand 3	E	142	147	anti-parallel
Strand 4	E	269	274	anti-parallel
Strand 5	E	242	246	anti-parallel
Strand 6	E	225	231	anti-parallel
Strand 7	E	173	179	anti-parallel
Strand 8	E	214	215	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	112	116	parallel
Strand 3	E	142	147	anti-parallel
Strand 4	E	269	274	anti-parallel
Strand 5	E	242	246	anti-parallel
Strand 6	E	225	231	anti-parallel
Strand 7	E	237	238	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	84	88	anti-parallel
Strand 3	E	78	81	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	121	first strand
Strand 2	E	137	139	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	E	265	266	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	332	first strand
Strand 2	E	303	307	parallel
Strand 3	E	353	357	parallel
Strand 4	E	366	371	anti-parallel
Strand 5	E	376	381	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZY9