Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZYR entry

There are 2 chains in PDB entry 5ZYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10ILE 315
B
 GLU 10ILE 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5ZYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 24Right-handed alpha
Helix 2
AA2
A
70 77Right-handed alpha
Helix 3
AA3
A
86 88Right-handed 310
Helix 4
AA4
A
89 96Right-handed alpha
Helix 5
AA5
A
113 115Right-handed 310
Helix 6
AA6
A
180 184Right-handed 310
Helix 7
AA7
A
186 190Right-handed 310
Helix 8
AA8
A
191 214Right-handed alpha
Helix 9
AA9
A
217 228Right-handed alpha
Helix 10
AB1
A
234 243Right-handed alpha
Helix 11
AB2
A
245 259Right-handed alpha
Helix 12
AB3
A
272 294Right-handed alpha
Helix 13
AB4
A
295 297Right-handed 310
Helix 14
AB5
A
298 314Right-handed alpha
Helix 15
AB6
B
15 24Right-handed alpha
Helix 16
AB7
B
70 77Right-handed alpha
Helix 17
AB8
B
89 96Right-handed alpha
Helix 18
AB9
B
113 115Right-handed 310
Helix 19
AC1
B
180 184Right-handed 310
Helix 20
AC2
B
186 190Right-handed 310
Helix 21
AC3
B
191 214Right-handed alpha
Helix 22
AC4
B
217 228Right-handed alpha
Helix 23
AC5
B
234 243Right-handed alpha
Helix 24
AC6
B
245 259Right-handed alpha
Helix 25
AC7
B
272 294Right-handed alpha
Helix 26
AC8
B
298 314Right-handed alpha
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There are 7 sheets in PDB entry 5ZYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
158 160anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
B
163 168anti-parallel
Strand 5
B
158 160anti-parallel
Strand 6
B
28 29anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
31 36anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
124 136anti-parallel
Strand 5
A
139 151anti-parallel
Strand 6
A
59 65anti-parallel
Strand 7
A
51 54anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
117 119anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
269 271anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
31 36anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
124 136anti-parallel
Strand 5
B
139 151anti-parallel
Strand 6
B
59 65anti-parallel
Strand 7
B
51 54anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
117 119anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
268 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il