Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZYT entry

There are 8 chains in PDB entry 5ZYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 96GLN 335
B
 VAL 96LYS 333
C
 ARG 95LYS 333
D
 VAL 96LYS 333
E
 C 9 T 16
F
 T 7 C 17
G
 G 1 C 18
H
 G 1 C 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5ZYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 129Right-handed 310
Helix 2
AA2
A
132 139Right-handed alpha
Helix 3
AA3
A
142 188Right-handed alpha
Helix 4
AA4
A
199 202Right-handed 310
Helix 5
AA5
A
203 214Right-handed alpha
Helix 6
AA6
A
261 266Right-handed 310
Helix 7
AA7
A
267 280Right-handed alpha
Helix 8
AA8
A
310 335Right-handed alpha
Helix 9
AA9
B
105 109Right-handed 310
Helix 10
AB1
B
124 129Right-handed 310
Helix 11
AB2
B
132 139Right-handed alpha
Helix 12
AB3
B
142 188Right-handed alpha
Helix 13
AB4
B
199 202Right-handed 310
Helix 14
AB5
B
203 215Right-handed alpha
Helix 15
AB6
B
261 266Right-handed 310
Helix 16
AB7
B
267 280Right-handed alpha
Helix 17
AB8
B
310 332Right-handed alpha
Helix 18
AB9
C
124 129Right-handed 310
Helix 19
AC1
C
132 139Right-handed alpha
Helix 20
AC2
C
142 188Right-handed alpha
Helix 21
AC3
C
199 202Right-handed 310
Helix 22
AC4
C
203 214Right-handed alpha
Helix 23
AC5
C
261 266Right-handed 310
Helix 24
AC6
C
267 280Right-handed alpha
Helix 25
AC7
C
310 332Right-handed alpha
Helix 26
AC8
D
124 129Right-handed 310
Helix 27
AC9
D
132 139Right-handed alpha
Helix 28
AD1
D
142 188Right-handed alpha
Helix 29
AD2
D
199 202Right-handed 310
Helix 30
AD3
D
203 214Right-handed alpha
Helix 31
AD4
D
261 266Right-handed 310
Helix 32
AD5
D
267 280Right-handed alpha
Helix 33
AD6
D
310 332Right-handed alpha
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There are 4 sheets in PDB entry 5ZYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 228first strand
Strand 2
A
233 243anti-parallel
Strand 3
A
246 255anti-parallel
Strand 4
A
292 298parallel
Strand 5
A
305 309anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 228first strand
Strand 2
B
233 243anti-parallel
Strand 3
B
246 255anti-parallel
Strand 4
B
291 298parallel
Strand 5
B
305 309anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 228first strand
Strand 2
C
233 243anti-parallel
Strand 3
C
246 255anti-parallel
Strand 4
C
291 298parallel
Strand 5
C
305 309anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
216 228first strand
Strand 2
D
233 243anti-parallel
Strand 3
D
246 255anti-parallel
Strand 4
D
291 298parallel
Strand 5
D
305 309anti-parallel
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