Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZYU entry

There are 4 chains in PDB entry 5ZYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 C 3 A 10
C
 C 3 A 10
A
 ASN 99ASN 336
B
 ASN 99ASN 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5ZYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 130Right-handed alpha
Helix 2
AA2
A
132 139Right-handed alpha
Helix 3
AA3
A
142 161Right-handed alpha
Helix 4
AA4
A
161 188Right-handed alpha
Helix 5
AA5
A
199 202Right-handed 310
Helix 6
AA6
A
203 209Right-handed alpha
Helix 7
AA7
A
209 214Right-handed alpha
Helix 8
AA8
A
261 266Right-handed 310
Helix 9
AA9
A
267 281Right-handed alpha
Helix 10
AB1
A
310 334Right-handed alpha
Helix 11
AB2
B
125 130Right-handed alpha
Helix 12
AB3
B
132 139Right-handed alpha
Helix 13
AB4
B
142 161Right-handed alpha
Helix 14
AB5
B
161 188Right-handed alpha
Helix 15
AB6
B
199 202Right-handed 310
Helix 16
AB7
B
203 209Right-handed alpha
Helix 17
AB8
B
209 214Right-handed alpha
Helix 18
AB9
B
261 266Right-handed 310
Helix 19
AC1
B
267 281Right-handed alpha
Helix 20
AC2
B
310 334Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5ZYU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 228first strand
Strand 2
A
233 243anti-parallel
Strand 3
A
246 254anti-parallel
Strand 4
A
291 297parallel
Strand 5
A
305 309anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 228first strand
Strand 2
B
233 243anti-parallel
Strand 3
B
246 254anti-parallel
Strand 4
B
291 297parallel
Strand 5
B
305 309anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il