Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZZ4 entry

There are 6 chains in PDB entry 5ZZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 395	MET 655
B	GLY 393	MET 655
C	SER 394	MET 655
D	GLY 393	MET 655
E	SER 394	MET 655
F	GLY 393	MET 655

There are 83 helices in PDB entry 5ZZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	398	402	Right-handed 310
Helix 2	AA2	A	438	446	Right-handed alpha
Helix 3	AA3	A	446	451	Right-handed alpha
Helix 4	AA4	A	481	488	Right-handed alpha
Helix 5	AA5	A	494	516	Right-handed alpha
Helix 6	AA6	A	523	525	Right-handed 310
Helix 7	AA7	A	541	546	Right-handed 310
Helix 8	AA8	A	548	553	Right-handed alpha
Helix 9	AA9	A	560	564	Right-handed 310
Helix 10	AB1	A	565	570	Right-handed alpha
Helix 11	AB2	A	575	592	Right-handed alpha
Helix 12	AB3	A	602	612	Right-handed alpha
Helix 13	AB4	A	623	633	Right-handed alpha
Helix 14	AB5	A	637	641	Right-handed 310
Helix 15	AB6	A	643	653	Right-handed alpha
Helix 16	AB7	B	398	400	Right-handed 310
Helix 17	AB8	B	438	451	Right-handed alpha
Helix 18	AB9	B	481	488	Right-handed alpha
Helix 19	AC1	B	494	515	Right-handed alpha
Helix 20	AC2	B	523	525	Right-handed 310
Helix 21	AC3	B	548	553	Right-handed alpha
Helix 22	AC4	B	560	564	Right-handed 310
Helix 23	AC5	B	565	570	Right-handed alpha
Helix 24	AC6	B	575	592	Right-handed alpha
Helix 25	AC7	B	602	613	Right-handed alpha
Helix 26	AC8	B	623	633	Right-handed alpha
Helix 27	AC9	B	637	641	Right-handed 310
Helix 28	AD1	B	643	654	Right-handed alpha
Helix 29	AD2	C	398	400	Right-handed 310
Helix 30	AD3	C	438	446	Right-handed alpha
Helix 31	AD4	C	446	451	Right-handed alpha
Helix 32	AD5	C	481	488	Right-handed alpha
Helix 33	AD6	C	494	515	Right-handed alpha
Helix 34	AD7	C	523	525	Right-handed 310
Helix 35	AD8	C	542	546	Right-handed 310
Helix 36	AD9	C	548	553	Right-handed alpha
Helix 37	AE1	C	560	564	Right-handed 310
Helix 38	AE2	C	565	572	Right-handed alpha
Helix 39	AE3	C	575	592	Right-handed alpha
Helix 40	AE4	C	602	612	Right-handed alpha
Helix 41	AE5	C	623	633	Right-handed alpha
Helix 42	AE6	C	637	641	Right-handed 310
Helix 43	AE7	C	643	654	Right-handed alpha
Helix 44	AE8	D	398	402	Right-handed 310
Helix 45	AE9	D	438	451	Right-handed alpha
Helix 46	AF1	D	481	488	Right-handed alpha
Helix 47	AF2	D	494	516	Right-handed alpha
Helix 48	AF3	D	523	525	Right-handed 310
Helix 49	AF4	D	542	546	Right-handed 310
Helix 50	AF5	D	548	553	Right-handed alpha
Helix 51	AF6	D	560	564	Right-handed 310
Helix 52	AF7	D	565	570	Right-handed alpha
Helix 53	AF8	D	575	592	Right-handed alpha
Helix 54	AF9	D	602	612	Right-handed alpha
Helix 55	AG1	D	623	633	Right-handed alpha
Helix 56	AG2	D	637	641	Right-handed 310
Helix 57	AG3	D	643	653	Right-handed alpha
Helix 58	AG4	E	398	400	Right-handed 310
Helix 59	AG5	E	438	451	Right-handed alpha
Helix 60	AG6	E	481	488	Right-handed alpha
Helix 61	AG7	E	494	515	Right-handed alpha
Helix 62	AG8	E	523	525	Right-handed 310
Helix 63	AG9	E	542	546	Right-handed 310
Helix 64	AH1	E	548	553	Right-handed alpha
Helix 65	AH2	E	560	564	Right-handed 310
Helix 66	AH3	E	565	570	Right-handed alpha
Helix 67	AH4	E	575	592	Right-handed alpha
Helix 68	AH5	E	602	612	Right-handed alpha
Helix 69	AH6	E	623	633	Right-handed alpha
Helix 70	AH7	E	637	641	Right-handed 310
Helix 71	AH8	E	643	654	Right-handed alpha
Helix 72	AH9	F	438	451	Right-handed alpha
Helix 73	AI1	F	482	488	Right-handed alpha
Helix 74	AI2	F	494	516	Right-handed alpha
Helix 75	AI3	F	542	546	Right-handed 310
Helix 76	AI4	F	548	553	Right-handed alpha
Helix 77	AI5	F	560	564	Right-handed 310
Helix 78	AI6	F	565	572	Right-handed alpha
Helix 79	AI7	F	575	592	Right-handed alpha
Helix 80	AI8	F	602	612	Right-handed alpha
Helix 81	AI9	F	623	633	Right-handed alpha
Helix 82	AJ1	F	637	641	Right-handed 310
Helix 83	AJ2	F	643	654	Right-handed alpha

There are 12 sheets in PDB entry 5ZZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	411	first strand
Strand 2	A	414	421	anti-parallel
Strand 3	A	425	432	anti-parallel
Strand 4	A	470	475	anti-parallel
Strand 5	A	460	464	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	529	first strand
Strand 2	A	535	537	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	411	first strand
Strand 2	B	414	421	anti-parallel
Strand 3	B	425	432	anti-parallel
Strand 4	B	470	475	anti-parallel
Strand 5	B	460	464	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	529	first strand
Strand 2	B	535	537	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	411	first strand
Strand 2	C	414	421	anti-parallel
Strand 3	C	425	431	anti-parallel
Strand 4	C	471	475	anti-parallel
Strand 5	C	460	464	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	529	first strand
Strand 2	C	535	537	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	411	first strand
Strand 2	D	414	421	anti-parallel
Strand 3	D	425	431	anti-parallel
Strand 4	D	471	475	anti-parallel
Strand 5	D	462	464	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	529	first strand
Strand 2	D	535	537	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	402	410	first strand
Strand 2	E	415	421	anti-parallel
Strand 3	E	426	431	anti-parallel
Strand 4	E	471	475	anti-parallel
Strand 5	E	460	464	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	527	529	first strand
Strand 2	E	535	537	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	402	411	first strand
Strand 2	F	414	421	anti-parallel
Strand 3	F	425	432	anti-parallel
Strand 4	F	470	475	anti-parallel
Strand 5	F	460	464	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	480	481	first strand
Strand 2	F	527	529	anti-parallel
Strand 3	F	535	537	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZZ4