Analysis of interatomic Contacts of Structural Units in PDB entry:
6A0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A0J entry

There is 1 chain in PDB entry 6A0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1THR 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6A0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 10Right-handed 310
Helix 2
AA2
A
16 20Right-handed 310
Helix 3
AA3
A
24 28Right-handed 310
Helix 4
AA4
A
48 55Right-handed alpha
Helix 5
AA5
A
55 63Right-handed alpha
Helix 6
AA6
A
95 110Right-handed alpha
Helix 7
AA7
A
126 136Right-handed alpha
Helix 8
AA8
A
137 139Right-handed 310
Helix 9
AA9
A
141 145Right-handed 310
Helix 10
AB1
A
176 193Right-handed alpha
Helix 11
AB2
A
202 206Right-handed 310
Helix 12
AB3
A
207 222Right-handed alpha
Helix 13
AB4
A
235 239Right-handed 310
Helix 14
AB5
A
249 261Right-handed alpha
Helix 15
AB6
A
266 281Right-handed alpha
Helix 16
AB7
A
285 288Right-handed 310
Helix 17
AB8
A
300 305Right-handed alpha
Helix 18
AB9
A
308 322Right-handed alpha
Helix 19
AC1
A
331 335Right-handed 310
Helix 20
AC2
A
351 355Right-handed 310
Helix 21
AC3
A
356 373Right-handed alpha
Helix 22
AC4
A
373 379Right-handed alpha
Helix 23
AC5
A
417 419Right-handed 310
Helix 24
AC6
A
422 426Right-handed 310
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There are 4 sheets in PDB entry 6A0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
197 200parallel
Strand 3
A
112 117parallel
Strand 4
A
66 69parallel
Strand 5
A
12 15parallel
Strand 6
A
325 329parallel
Strand 7
A
290 292parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
166 170anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 387first strand
Strand 2
A
390 396anti-parallel
Strand 3
A
401 407anti-parallel
Strand 4
A
437 441anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
429 432anti-parallel
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