Analysis of interatomic Contacts of Structural Units in PDB entry:
6A0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A0K entry

There are 2 chains in PDB entry 6A0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 2ALA 443
A
 VAL 1ALA 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 6A0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 10Right-handed 310
Helix 2
AA2
B
16 20Right-handed 310
Helix 3
AA3
B
24 28Right-handed 310
Helix 4
AA4
B
48 55Right-handed alpha
Helix 5
AA5
B
55 63Right-handed alpha
Helix 6
AA6
B
95 109Right-handed alpha
Helix 7
AA7
B
126 136Right-handed alpha
Helix 8
AA8
B
137 139Right-handed 310
Helix 9
AA9
B
141 145Right-handed 310
Helix 10
AB1
B
176 193Right-handed alpha
Helix 11
AB2
B
202 206Right-handed 310
Helix 12
AB3
B
207 222Right-handed alpha
Helix 13
AB4
B
235 239Right-handed 310
Helix 14
AB5
B
249 261Right-handed alpha
Helix 15
AB6
B
266 281Right-handed alpha
Helix 16
AB7
B
300 305Right-handed alpha
Helix 17
AB8
B
308 322Right-handed alpha
Helix 18
AB9
B
331 335Right-handed 310
Helix 19
AC1
B
351 355Right-handed 310
Helix 20
AC2
B
356 373Right-handed alpha
Helix 21
AC3
B
374 379Right-handed alpha
Helix 22
AC4
B
417 419Right-handed 310
Helix 23
AC5
B
422 426Right-handed 310
Helix 24
AC6
A
4 10Right-handed 310
Helix 25
AC7
A
16 20Right-handed 310
Helix 26
AC8
A
24 28Right-handed 310
Helix 27
AC9
A
48 55Right-handed alpha
Helix 28
AD1
A
55 63Right-handed alpha
Helix 29
AD2
A
95 110Right-handed alpha
Helix 30
AD3
A
126 136Right-handed alpha
Helix 31
AD4
A
137 139Right-handed 310
Helix 32
AD5
A
141 145Right-handed 310
Helix 33
AD6
A
176 193Right-handed alpha
Helix 34
AD7
A
202 206Right-handed 310
Helix 35
AD8
A
207 222Right-handed alpha
Helix 36
AD9
A
235 239Right-handed 310
Helix 37
AE1
A
249 261Right-handed alpha
Helix 38
AE2
A
266 281Right-handed alpha
Helix 39
AE3
A
285 288Right-handed 310
Helix 40
AE4
A
300 305Right-handed alpha
Helix 41
AE5
A
308 322Right-handed alpha
Helix 42
AE6
A
331 335Right-handed 310
Helix 43
AE7
A
351 355Right-handed 310
Helix 44
AE8
A
356 373Right-handed alpha
Helix 45
AE9
A
374 379Right-handed alpha
Helix 46
AF1
A
419 423Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 6A0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
197 200parallel
Strand 3
B
112 117parallel
Strand 4
B
66 69parallel
Strand 5
B
12 15parallel
Strand 6
B
325 329parallel
Strand 7
B
290 291parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
83 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
166 170anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 387first strand
Strand 2
B
390 396anti-parallel
Strand 3
B
401 407anti-parallel
Strand 4
B
437 442anti-parallel
Strand 5
A
429 432anti-parallel
Strand 6
A
412 415anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 415first strand
Strand 2
B
429 432anti-parallel
Strand 3
A
437 441anti-parallel
Strand 4
A
400 407anti-parallel
Strand 5
A
390 397anti-parallel
Strand 6
A
380 387anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
226 229parallel
Strand 3
A
197 200parallel
Strand 4
A
112 117parallel
Strand 5
A
66 69parallel
Strand 6
A
12 15parallel
Strand 7
A
325 329parallel
Strand 8
A
290 291parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
83 89anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il