Analysis of interatomic Contacts of Structural Units in PDB entry:
6A12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A12 entry

There is 1 chain in PDB entry 6A12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PRO 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6A12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
58 72Right-handed alpha
Helix 4
AA4
A
78 86Right-handed alpha
Helix 5
AA5
A
98 102Right-handed 310
Helix 6
AA6
A
114 129Right-handed alpha
Helix 7
AA7
A
130 141Right-handed alpha
Helix 8
AA8
A
145 149Right-handed 310
Helix 9
AA9
A
168 173Right-handed 310
Helix 10
AB1
A
175 191Right-handed alpha
Helix 11
AB2
A
220 230Right-handed alpha
Helix 12
AB3
A
231 236Right-handed alpha
Helix 13
AB4
A
239 245Right-handed alpha
Helix 14
AB5
A
245 254Right-handed alpha
Helix 15
AB6
A
288 295Right-handed alpha
Helix 16
AB7
A
295 300Right-handed alpha
Helix 17
AB8
A
310 314Right-handed 310
Helix 18
AB9
A
321 325Right-handed 310
Helix 19
AC1
A
371 385Right-handed alpha
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There are 3 sheets in PDB entry 6A12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
10 13parallel
Strand 3
A
107 112parallel
Strand 4
A
155 161parallel
Strand 5
A
263 269parallel
Strand 6
A
348 354parallel
Strand 7
A
336 338parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
90 94anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
281 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il