Analysis of interatomic Contacts of Structural Units in PDB entry:
6A29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6A29 entry

There are 8 chains in PDB entry 6A29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	SER 284
B	THR 10	SER 284
C	THR 10	SER 284
D	THR 10	SER 284
E	LYS 7	SER 284
F	THR 10	SER 284
G	THR 10	SER 284
H	THR 10	SER 284

There are 96 helices in PDB entry 6A29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	31	36	Right-handed alpha
Helix 3	AA3	A	39	59	Right-handed alpha
Helix 4	AA4	A	92	101	Right-handed alpha
Helix 5	AA5	A	102	104	Right-handed 310
Helix 6	AA6	A	128	138	Right-handed alpha
Helix 7	AA7	A	150	152	Right-handed 310
Helix 8	AA8	A	173	187	Right-handed alpha
Helix 9	AA9	A	191	206	Right-handed alpha
Helix 10	AB1	A	206	217	Right-handed alpha
Helix 11	AB2	A	226	230	Right-handed 310
Helix 12	AB3	A	243	246	Right-handed 310
Helix 13	AB4	A	247	278	Right-handed alpha
Helix 14	AB5	B	12	23	Right-handed alpha
Helix 15	AB6	B	29	36	Right-handed alpha
Helix 16	AB7	B	39	59	Right-handed alpha
Helix 17	AB8	B	92	101	Right-handed alpha
Helix 18	AB9	B	102	104	Right-handed 310
Helix 19	AC1	B	128	138	Right-handed alpha
Helix 20	AC2	B	173	188	Right-handed alpha
Helix 21	AC3	B	191	206	Right-handed alpha
Helix 22	AC4	B	206	220	Right-handed alpha
Helix 23	AC5	B	226	230	Right-handed 310
Helix 24	AC6	B	243	246	Right-handed 310
Helix 25	AC7	B	247	279	Right-handed alpha
Helix 26	AC8	C	12	23	Right-handed alpha
Helix 27	AC9	C	29	36	Right-handed alpha
Helix 28	AD1	C	39	59	Right-handed alpha
Helix 29	AD2	C	92	101	Right-handed alpha
Helix 30	AD3	C	102	104	Right-handed 310
Helix 31	AD4	C	128	139	Right-handed alpha
Helix 32	AD5	C	150	152	Right-handed 310
Helix 33	AD6	C	173	187	Right-handed alpha
Helix 34	AD7	C	191	202	Right-handed alpha
Helix 35	AD8	C	206	214	Right-handed alpha
Helix 36	AD9	C	226	230	Right-handed 310
Helix 37	AE1	C	243	246	Right-handed 310
Helix 38	AE2	C	247	278	Right-handed alpha
Helix 39	AE3	D	12	23	Right-handed alpha
Helix 40	AE4	D	29	36	Right-handed alpha
Helix 41	AE5	D	39	59	Right-handed alpha
Helix 42	AE6	D	92	101	Right-handed alpha
Helix 43	AE7	D	102	104	Right-handed 310
Helix 44	AE8	D	128	137	Right-handed alpha
Helix 45	AE9	D	173	187	Right-handed alpha
Helix 46	AF1	D	191	205	Right-handed alpha
Helix 47	AF2	D	206	211	Right-handed alpha
Helix 48	AF3	D	212	217	Right-handed alpha
Helix 49	AF4	D	226	230	Right-handed 310
Helix 50	AF5	D	243	246	Right-handed 310
Helix 51	AF6	D	247	280	Right-handed alpha
Helix 52	AF7	E	9	23	Right-handed alpha
Helix 53	AF8	E	29	36	Right-handed alpha
Helix 54	AF9	E	39	59	Right-handed alpha
Helix 55	AG1	E	92	101	Right-handed alpha
Helix 56	AG2	E	102	104	Right-handed 310
Helix 57	AG3	E	128	138	Right-handed alpha
Helix 58	AG4	E	173	188	Right-handed alpha
Helix 59	AG5	E	191	202	Right-handed alpha
Helix 60	AG6	E	206	215	Right-handed alpha
Helix 61	AG7	E	226	230	Right-handed 310
Helix 62	AG8	E	243	246	Right-handed 310
Helix 63	AG9	E	247	277	Right-handed alpha
Helix 64	AH1	F	15	23	Right-handed alpha
Helix 65	AH2	F	49	59	Right-handed alpha
Helix 66	AH3	F	92	101	Right-handed alpha
Helix 67	AH4	F	102	104	Right-handed 310
Helix 68	AH5	F	128	137	Right-handed alpha
Helix 69	AH6	F	173	187	Right-handed alpha
Helix 70	AH7	F	191	202	Right-handed alpha
Helix 71	AH8	F	226	230	Right-handed 310
Helix 72	AH9	F	250	275	Right-handed alpha
Helix 73	AI1	F	276	278	Right-handed 310
Helix 74	AI2	G	12	24	Right-handed alpha
Helix 75	AI3	G	29	36	Right-handed alpha
Helix 76	AI4	G	39	59	Right-handed alpha
Helix 77	AI5	G	92	101	Right-handed alpha
Helix 78	AI6	G	102	104	Right-handed 310
Helix 79	AI7	G	128	138	Right-handed alpha
Helix 80	AI8	G	173	187	Right-handed alpha
Helix 81	AI9	G	191	202	Right-handed alpha
Helix 82	AJ1	G	205	220	Right-handed alpha
Helix 83	AJ2	G	226	230	Right-handed 310
Helix 84	AJ3	G	243	246	Right-handed 310
Helix 85	AJ4	G	247	279	Right-handed alpha
Helix 86	AJ5	H	13	22	Right-handed alpha
Helix 87	AJ6	H	29	36	Right-handed alpha
Helix 88	AJ7	H	39	59	Right-handed alpha
Helix 89	AJ8	H	92	101	Right-handed alpha
Helix 90	AJ9	H	102	104	Right-handed 310
Helix 91	AK1	H	128	138	Right-handed alpha
Helix 92	AK2	H	173	187	Right-handed alpha
Helix 93	AK3	H	191	202	Right-handed alpha
Helix 94	AK4	H	206	211	Right-handed alpha
Helix 95	AK5	H	247	266	Right-handed alpha
Helix 96	AK6	H	274	279	Right-handed alpha

There are 23 sheets in PDB entry 6A29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	77	81	anti-parallel
Strand 3	A	84	88	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	153	160	anti-parallel
Strand 3	A	147	149	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	153	160	anti-parallel
Strand 3	A	163	169	anti-parallel
Strand 4	A	235	241	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	77	81	anti-parallel
Strand 3	B	84	88	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	142	144	parallel
Strand 3	B	153	160	anti-parallel
Strand 4	B	147	149	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	142	144	parallel
Strand 3	B	153	160	anti-parallel
Strand 4	B	163	169	anti-parallel
Strand 5	B	235	241	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	77	81	anti-parallel
Strand 3	C	84	88	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	153	160	anti-parallel
Strand 3	C	147	149	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	153	160	anti-parallel
Strand 3	C	163	169	anti-parallel
Strand 4	C	235	241	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	77	81	anti-parallel
Strand 3	D	84	88	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	153	160	anti-parallel
Strand 3	D	147	149	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	153	160	anti-parallel
Strand 3	D	163	169	anti-parallel
Strand 4	D	235	241	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	77	81	anti-parallel
Strand 3	E	84	88	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	142	144	parallel
Strand 3	E	154	160	anti-parallel
Strand 4	E	147	148	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	142	144	parallel
Strand 3	E	154	160	anti-parallel
Strand 4	E	163	169	anti-parallel
Strand 5	E	235	241	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	70	first strand
Strand 2	F	78	81	anti-parallel
Strand 3	F	85	88	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	159	first strand
Strand 2	F	163	169	anti-parallel
Strand 3	F	235	241	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	71	first strand
Strand 2	G	77	81	anti-parallel
Strand 3	G	84	88	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	123	first strand
Strand 2	G	142	144	parallel
Strand 3	G	154	160	anti-parallel
Strand 4	G	163	169	anti-parallel
Strand 5	G	235	241	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	70	first strand
Strand 2	H	78	81	anti-parallel
Strand 3	H	85	88	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	107	first strand
Strand 2	H	111	112	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	143	first strand
Strand 2	H	153	160	anti-parallel
Strand 3	H	147	149	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	143	first strand
Strand 2	H	153	160	anti-parallel
Strand 3	H	163	169	anti-parallel
Strand 4	H	235	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6A29

Analysis of interatomic Contacts of Structural Units in PDB entry:
6A29