Analysis of interatomic Contacts of Structural Units in PDB entry:
6A2R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A2R entry

There are 12 chains in PDB entry 6A2R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 138ILE 166
A
 ASP 168VAL 236
B
 VAL 138ILE 166
B
 ASP 168VAL 236
C
 VAL 138ILE 166
C
 ASP 168VAL 236
D
 VAL 138ILE 166
D
 ASP 168VAL 236
E
 VAL 138ILE 166
E
 ASP 168VAL 236
F
 VAL 138ILE 166
F
 ASP 168VAL 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6A2R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
142 146Right-handed 310
Helix 2
AA2
A
161 165Right-handed 310
Helix 3
AA3
A
221 223Right-handed 310
Helix 4
AA4
B
142 146Right-handed 310
Helix 5
AA5
B
161 165Right-handed 310
Helix 6
AA6
B
221 223Right-handed 310
Helix 7
AA7
C
142 146Right-handed 310
Helix 8
AA8
C
161 165Right-handed 310
Helix 9
AA9
C
221 223Right-handed 310
Helix 10
AB1
D
142 146Right-handed 310
Helix 11
AB2
D
161 165Right-handed 310
Helix 12
AB3
D
221 223Right-handed 310
Helix 13
AB4
E
142 146Right-handed 310
Helix 14
AB5
E
161 165Right-handed 310
Helix 15
AB6
E
221 223Right-handed 310
Helix 16
AB7
F
142 146Right-handed 310
Helix 17
AB8
F
161 165Right-handed 310
Helix 18
AB9
F
221 223Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6A2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
171 176anti-parallel
Strand 3
A
224 235anti-parallel
Strand 4
B
224 235anti-parallel
Strand 5
B
171 176anti-parallel
Strand 6
B
151 155anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
207 209anti-parallel
Strand 3
A
194 200anti-parallel
Strand 4
A
185 189anti-parallel
Strand 5
A
224 235anti-parallel
Strand 6
B
224 235anti-parallel
Strand 7
B
185 189anti-parallel
Strand 8
B
194 200anti-parallel
Strand 9
B
207 209anti-parallel
Strand 10
B
218 219anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 155first strand
Strand 2
C
171 176anti-parallel
Strand 3
C
224 235anti-parallel
Strand 4
D
224 235anti-parallel
Strand 5
D
171 176anti-parallel
Strand 6
D
151 155anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 219first strand
Strand 2
C
207 209anti-parallel
Strand 3
C
194 200anti-parallel
Strand 4
C
185 189anti-parallel
Strand 5
C
224 235anti-parallel
Strand 6
D
224 235anti-parallel
Strand 7
D
185 190anti-parallel
Strand 8
D
193 202anti-parallel
Strand 9
D
205 209anti-parallel
Strand 10
D
218 219anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
151 155first strand
Strand 2
E
171 176anti-parallel
Strand 3
E
224 235anti-parallel
Strand 4
F
224 235anti-parallel
Strand 5
F
171 176anti-parallel
Strand 6
F
151 155anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
218 219first strand
Strand 2
E
207 209anti-parallel
Strand 3
E
194 200anti-parallel
Strand 4
E
185 189anti-parallel
Strand 5
E
224 235anti-parallel
Strand 6
F
224 235anti-parallel
Strand 7
F
185 190anti-parallel
Strand 8
F
193 200anti-parallel
Strand 9
F
207 209anti-parallel
Strand 10
F
218 219anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il