Analysis of interatomic Contacts of Structural Units in PDB entry:
6A35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6A35 entry

There are 4 chains in PDB entry 6A35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 356
B	MET 1	ASN 356
C	MET 1	ASN 356
D	MET 1	ASN 356

There are 72 helices in PDB entry 6A35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	11	Right-handed alpha
Helix 2	AA2	A	29	32	Right-handed 310
Helix 3	AA3	A	43	53	Right-handed alpha
Helix 4	AA4	A	58	75	Right-handed alpha
Helix 5	AA5	A	81	98	Right-handed alpha
Helix 6	AA6	A	103	120	Right-handed alpha
Helix 7	AA7	A	124	158	Right-handed alpha
Helix 8	AA8	A	170	174	Right-handed 310
Helix 9	AA9	A	179	191	Right-handed alpha
Helix 10	AB1	A	205	210	Right-handed alpha
Helix 11	AB2	A	210	218	Right-handed alpha
Helix 12	AB3	A	226	228	Right-handed 310
Helix 13	AB4	A	229	236	Right-handed alpha
Helix 14	AB5	A	260	271	Right-handed alpha
Helix 15	AB6	A	280	282	Right-handed 310
Helix 16	AB7	A	290	294	Right-handed 310
Helix 17	AB8	A	301	305	Right-handed alpha
Helix 18	AB9	A	327	331	Right-handed 310
Helix 19	AC1	A	344	355	Right-handed alpha
Helix 20	AC2	B	6	11	Right-handed alpha
Helix 21	AC3	B	29	32	Right-handed 310
Helix 22	AC4	B	43	53	Right-handed alpha
Helix 23	AC5	B	58	75	Right-handed alpha
Helix 24	AC6	B	81	98	Right-handed alpha
Helix 25	AC7	B	103	120	Right-handed alpha
Helix 26	AC8	B	124	158	Right-handed alpha
Helix 27	AC9	B	170	174	Right-handed 310
Helix 28	AD1	B	179	191	Right-handed alpha
Helix 29	AD2	B	205	210	Right-handed alpha
Helix 30	AD3	B	210	218	Right-handed alpha
Helix 31	AD4	B	226	228	Right-handed 310
Helix 32	AD5	B	229	236	Right-handed alpha
Helix 33	AD6	B	260	271	Right-handed alpha
Helix 34	AD7	B	280	284	Right-handed 310
Helix 35	AD8	B	290	294	Right-handed 310
Helix 36	AD9	B	301	305	Right-handed alpha
Helix 37	AE1	B	327	331	Right-handed 310
Helix 38	AE2	B	344	355	Right-handed alpha
Helix 39	AE3	C	6	11	Right-handed alpha
Helix 40	AE4	C	43	53	Right-handed alpha
Helix 41	AE5	C	58	75	Right-handed alpha
Helix 42	AE6	C	81	98	Right-handed alpha
Helix 43	AE7	C	103	120	Right-handed alpha
Helix 44	AE8	C	124	158	Right-handed alpha
Helix 45	AE9	C	170	174	Right-handed 310
Helix 46	AF1	C	179	191	Right-handed alpha
Helix 47	AF2	C	205	210	Right-handed alpha
Helix 48	AF3	C	210	219	Right-handed alpha
Helix 49	AF4	C	228	236	Right-handed alpha
Helix 50	AF5	C	260	271	Right-handed alpha
Helix 51	AF6	C	280	282	Right-handed 310
Helix 52	AF7	C	290	294	Right-handed 310
Helix 53	AF8	C	301	305	Right-handed alpha
Helix 54	AF9	C	327	331	Right-handed 310
Helix 55	AG1	C	344	355	Right-handed alpha
Helix 56	AG2	D	43	53	Right-handed alpha
Helix 57	AG3	D	58	75	Right-handed alpha
Helix 58	AG4	D	81	97	Right-handed alpha
Helix 59	AG5	D	104	119	Right-handed alpha
Helix 60	AG6	D	124	158	Right-handed alpha
Helix 61	AG7	D	170	174	Right-handed 310
Helix 62	AG8	D	178	191	Right-handed alpha
Helix 63	AG9	D	205	210	Right-handed alpha
Helix 64	AH1	D	210	218	Right-handed alpha
Helix 65	AH2	D	226	228	Right-handed 310
Helix 66	AH3	D	229	236	Right-handed alpha
Helix 67	AH4	D	260	270	Right-handed alpha
Helix 68	AH5	D	280	282	Right-handed 310
Helix 69	AH6	D	290	294	Right-handed 310
Helix 70	AH7	D	301	305	Right-handed alpha
Helix 71	AH8	D	327	331	Right-handed 310
Helix 72	AH9	D	344	356	Right-handed alpha

There are 16 sheets in PDB entry 6A35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	20	first strand
Strand 2	A	23	27	anti-parallel
Strand 3	A	38	41	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	193	199	parallel
Strand 3	A	161	165	parallel
Strand 4	A	241	244	parallel
Strand 5	A	275	278	parallel
Strand 6	A	333	336	parallel
Strand 7	A	339	341	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	248	250	parallel
Strand 3	A	255	258	anti-parallel
Strand 4	A	323	326	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	310	311	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	24	27	anti-parallel
Strand 3	B	38	41	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	225	first strand
Strand 2	B	193	199	parallel
Strand 3	B	161	166	parallel
Strand 4	B	241	244	parallel
Strand 5	B	275	278	parallel
Strand 6	B	333	336	parallel
Strand 7	B	339	341	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	255	258	anti-parallel
Strand 3	B	323	326	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	310	311	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	C	23	27	anti-parallel
Strand 3	C	38	41	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	225	first strand
Strand 2	C	195	199	parallel
Strand 3	C	162	165	parallel
Strand 4	C	241	244	parallel
Strand 5	C	275	278	parallel
Strand 6	C	333	336	parallel
Strand 7	C	339	341	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	248	250	parallel
Strand 3	C	255	258	anti-parallel
Strand 4	C	323	326	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	310	311	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	20	first strand
Strand 2	D	23	27	anti-parallel
Strand 3	D	38	41	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	225	first strand
Strand 2	D	193	199	parallel
Strand 3	D	161	165	parallel
Strand 4	D	241	244	parallel
Strand 5	D	275	278	parallel
Strand 6	D	333	336	parallel
Strand 7	D	339	341	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	248	250	parallel
Strand 3	D	255	258	anti-parallel
Strand 4	D	323	326	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	D	310	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6A35

Analysis of interatomic Contacts of Structural Units in PDB entry:
6A35