Analysis of interatomic Contacts of Structural Units in PDB entry:
6A42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A42 entry

There is 1 chain in PDB entry 6A42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5ARG 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6A42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 27Right-handed alpha
Helix 2
AA2
A
27 36Right-handed alpha
Helix 3
AA3
A
76 79Right-handed 310
Helix 4
AA4
A
106 120Right-handed alpha
Helix 5
AA5
A
135 139Right-handed 310
Helix 6
AA6
A
141 146Right-handed alpha
Helix 7
AA7
A
149 166Right-handed alpha
Helix 8
AA8
A
248 260Right-handed alpha
Helix 9
AA9
A
262 264Right-handed 310
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There are 4 sheets in PDB entry 6A42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
61 65anti-parallel
Strand 3
A
39 43anti-parallel
Strand 4
A
11 17parallel
Strand 5
A
216 220anti-parallel
Strand 6
A
200 205anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
83 88anti-parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
124 130parallel
Strand 5
A
190 194anti-parallel
Strand 6
A
169 170anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
186 187anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 242first strand
Strand 2
A
226 231anti-parallel
Strand 3
A
291 296parallel
Strand 4
A
266 270anti-parallel
Strand 5
A
273 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il