Analysis of interatomic Contacts of Structural Units in PDB entry:
6A48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A48 entry

There is 1 chain in PDB entry 6A48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 200ARG 865
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6A48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
317 321Right-handed 310
Helix 2
AA2
A
369 373Right-handed 310
Helix 3
AA3
A
490 493Right-handed 310
Helix 4
AA4
A
529 533Right-handed 310
Helix 5
AA5
A
641 645Right-handed 310
Helix 6
AA6
A
675 681Right-handed 310
Helix 7
AA7
A
720 724Right-handed 310
Helix 8
AA8
A
830 834Right-handed 310
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There are 16 sheets in PDB entry 6A48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
240 243anti-parallel
Strand 4
A
227 229anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
344 353anti-parallel
Strand 3
A
262 270anti-parallel
Strand 4
A
310 315anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
325 331anti-parallel
Strand 3
A
283 289anti-parallel
Strand 4
A
296 301anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
664 673anti-parallel
Strand 3
A
391 394anti-parallel
Strand 4
A
379 382anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
664 673anti-parallel
Strand 3
A
571 579anti-parallel
Strand 4
A
633 639anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 406first strand
Strand 2
A
650 655anti-parallel
Strand 3
A
589 595anti-parallel
Strand 4
A
603 604anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 406first strand
Strand 2
A
650 655anti-parallel
Strand 3
A
589 595anti-parallel
Strand 4
A
624 626anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
554 562anti-parallel
Strand 3
A
451 454anti-parallel
Strand 4
A
438 440anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
554 562anti-parallel
Strand 3
A
474 481anti-parallel
Strand 4
A
522 527anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
461 463anti-parallel
Strand 3
A
537 543anti-parallel
Strand 4
A
495 501anti-parallel
Strand 5
A
507 513anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
683 686first strand
Strand 2
A
689 692anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 697first strand
Strand 2
A
703 704anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 714first strand
Strand 2
A
855 862anti-parallel
Strand 3
A
747 750anti-parallel
Strand 4
A
734 736anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 714first strand
Strand 2
A
855 862anti-parallel
Strand 3
A
770 777anti-parallel
Strand 4
A
823 828anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 731first strand
Strand 2
A
756 760anti-parallel
Strand 3
A
836 844anti-parallel
Strand 4
A
763 764anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 731first strand
Strand 2
A
756 760anti-parallel
Strand 3
A
836 844anti-parallel
Strand 4
A
796 801anti-parallel
Strand 5
A
809 814anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il