Analysis of interatomic Contacts of Structural Units in PDB entry:
6A5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A5B entry

There is 1 chain in PDB entry 6A5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 34GLY 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6A5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 128Right-handed 310
Helix 2
AA2
A
144 153Right-handed alpha
Helix 3
AA3
A
237 241Right-handed 310
Helix 4
AA4
A
252 255Right-handed 310
Helix 5
AA5
A
279 283Right-handed 310
Helix 6
AA6
A
284 289Right-handed alpha
Helix 7
AA7
A
297 302Right-handed alpha
Helix 8
AA8
A
353 359Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6A5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
35 39parallel
Strand 4
A
189 195anti-parallel
Strand 5
A
107 115anti-parallel
Strand 6
A
157 165anti-parallel
Strand 7
A
223 230anti-parallel
Strand 8
A
249 250parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
35 39parallel
Strand 4
A
189 195anti-parallel
Strand 5
A
107 115anti-parallel
Strand 6
A
157 165anti-parallel
Strand 7
A
223 230anti-parallel
Strand 8
A
403 409anti-parallel
Strand 9
A
317 324anti-parallel
Strand 10
A
365 371anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
185 187anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
137 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
290 293anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 313first strand
Strand 2
A
379 388anti-parallel
Strand 3
A
339 343anti-parallel
Strand 4
A
346 352anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il