Analysis of interatomic Contacts of Structural Units in PDB entry:
6A5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A5C entry

There is 1 chain in PDB entry 6A5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 27SER 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6A5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 55Right-handed 310
Helix 2
AA2
A
115 119Right-handed 310
Helix 3
AA3
A
135 144Right-handed alpha
Helix 4
AA4
A
225 229Right-handed 310
Helix 5
AA5
A
241 244Right-handed 310
Helix 6
AA6
A
267 271Right-handed 310
Helix 7
AA7
A
272 277Right-handed alpha
Helix 8
AA8
A
285 291Right-handed alpha
Helix 9
AA9
A
342 348Right-handed alpha
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There are 6 sheets in PDB entry 6A5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
30 33parallel
Strand 4
A
181 187anti-parallel
Strand 5
A
99 106anti-parallel
Strand 6
A
148 154anti-parallel
Strand 7
A
211 218anti-parallel
Strand 8
A
394 400anti-parallel
Strand 9
A
304 313anti-parallel
Strand 10
A
353 362anti-parallel
Strand 11
A
193 196parallel
Strand 12
A
203 205anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
30 33parallel
Strand 4
A
181 187anti-parallel
Strand 5
A
99 106anti-parallel
Strand 6
A
148 154anti-parallel
Strand 7
A
211 218anti-parallel
Strand 8
A
238 239parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
80 84anti-parallel
Strand 3
A
177 179anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
161 168anti-parallel
Strand 3
A
121 125anti-parallel
Strand 4
A
128 134anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
391 392anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 299first strand
Strand 2
A
372 379anti-parallel
Strand 3
A
325 329anti-parallel
Strand 4
A
332 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il