Analysis of interatomic Contacts of Structural Units in PDB entry:
6A5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6A5E entry

There are 6 chains in PDB entry 6A5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 29	PRO 423
C	THR 42	THR 125
E	ARG 4	CYS 18
F	ARG 4	CYS 18
D	THR 42	THR 125
B	ASP 29	PRO 423

There are 28 helices in PDB entry 6A5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	89	Right-handed alpha
Helix 2	AA2	A	144	152	Right-handed alpha
Helix 3	AA3	A	237	241	Right-handed 310
Helix 4	AA4	A	252	255	Right-handed 310
Helix 5	AA5	A	284	289	Right-handed alpha
Helix 6	AA6	A	297	303	Right-handed alpha
Helix 7	AA7	A	354	359	Right-handed alpha
Helix 8	AA8	C	53	58	Right-handed alpha
Helix 9	AA9	C	66	79	Right-handed alpha
Helix 10	AB1	C	81	86	Right-handed alpha
Helix 11	AB2	C	91	105	Right-handed alpha
Helix 12	AB3	C	109	115	Right-handed alpha
Helix 13	AB4	E	7	12	Right-handed alpha
Helix 14	AB5	E	13	15	Right-handed 310
Helix 15	AB6	F	7	12	Right-handed alpha
Helix 16	AB7	F	13	15	Right-handed 310
Helix 17	AB8	D	53	58	Right-handed alpha
Helix 18	AB9	D	66	79	Right-handed alpha
Helix 19	AC1	D	81	86	Right-handed alpha
Helix 20	AC2	D	91	105	Right-handed alpha
Helix 21	AC3	D	109	115	Right-handed alpha
Helix 22	AC4	B	84	89	Right-handed alpha
Helix 23	AC5	B	144	152	Right-handed alpha
Helix 24	AC6	B	237	241	Right-handed 310
Helix 25	AC7	B	252	255	Right-handed 310
Helix 26	AC8	B	284	289	Right-handed alpha
Helix 27	AC9	B	297	303	Right-handed alpha
Helix 28	AD1	B	354	359	Right-handed alpha

There are 12 sheets in PDB entry 6A5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	35	39	parallel
Strand 3	A	189	195	anti-parallel
Strand 4	A	107	115	anti-parallel
Strand 5	A	157	165	anti-parallel
Strand 6	A	223	230	anti-parallel
Strand 7	A	249	250	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	35	39	parallel
Strand 3	A	189	195	anti-parallel
Strand 4	A	107	115	anti-parallel
Strand 5	A	157	165	anti-parallel
Strand 6	A	223	230	anti-parallel
Strand 7	A	403	409	anti-parallel
Strand 8	A	317	324	anti-parallel
Strand 9	A	365	371	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	185	187	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	172	176	anti-parallel
Strand 3	A	130	134	anti-parallel
Strand 4	A	137	143	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	265	first strand
Strand 2	A	290	293	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	312	first strand
Strand 2	A	380	388	anti-parallel
Strand 3	A	338	343	anti-parallel
Strand 4	A	346	353	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	35	39	parallel
Strand 3	B	189	195	anti-parallel
Strand 4	B	107	115	anti-parallel
Strand 5	B	157	165	anti-parallel
Strand 6	B	223	230	anti-parallel
Strand 7	B	249	250	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	35	39	parallel
Strand 3	B	189	195	anti-parallel
Strand 4	B	107	115	anti-parallel
Strand 5	B	157	165	anti-parallel
Strand 6	B	223	230	anti-parallel
Strand 7	B	403	409	anti-parallel
Strand 8	B	317	324	anti-parallel
Strand 9	B	365	371	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	185	187	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	172	176	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	137	143	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	265	first strand
Strand 2	B	290	293	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	312	first strand
Strand 2	B	380	388	anti-parallel
Strand 3	B	338	343	anti-parallel
Strand 4	B	346	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6A5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6A5E