Analysis of interatomic Contacts of Structural Units in PDB entry:
6A5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A5K entry

There is 1 chain in PDB entry 6A5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 267TYR 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6A5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
267 293Right-handed alpha
Helix 2
AA2
A
306 318Right-handed alpha
Helix 3
AA3
A
343 350Right-handed alpha
Helix 4
AA4
A
418 431Right-handed alpha
Helix 5
AA5
A
489 498Right-handed alpha
Helix 6
AA6
A
542 546Right-handed 310
Helix 7
AA7
A
567 573Right-handed alpha
Helix 8
AA8
A
609 613Right-handed 310
Helix 9
AA9
A
652 658Right-handed alpha
Helix 10
AB1
A
661 663Right-handed 310
Helix 11
AB2
A
674 684Right-handed alpha
Helix 12
AB3
A
711 716Right-handed 310
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There are 7 sheets in PDB entry 6A5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
453 468anti-parallel
Strand 3
A
434 439anti-parallel
Strand 4
A
368 376parallel
Strand 5
A
360 365anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
453 468anti-parallel
Strand 3
A
474 482anti-parallel
Strand 4
A
389 393anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 507first strand
Strand 2
A
520 522anti-parallel
Strand 3
A
618 622parallel
Strand 4
A
628 632anti-parallel
Strand 5
A
754 757anti-parallel
Strand 6
A
717 718parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 535first strand
Strand 2
A
709 710parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
724 730parallel
Strand 3
A
740 745anti-parallel
Strand 4
A
641 644anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 651first strand
Strand 2
A
699 705anti-parallel
Strand 3
A
665 669anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 777first strand
Strand 2
A
788 790anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il