Analysis of interatomic Contacts of Structural Units in PDB entry:
6A67

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6A67 entry

There are 6 chains in PDB entry 6A67 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	LYS 226
L	VAL 3	THR 214
C	GLN 1	LYS 226
D	VAL 3	THR 214
B	PRO 49	LYS 258
A	PRO 49	LYS 258

There are 26 helices in PDB entry 6A67. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	65	67	Right-handed 310
Helix 2	AA2	H	88	92	Right-handed 310
Helix 3	AA3	H	168	170	Right-handed 310
Helix 4	AA4	H	199	203	Right-handed 310
Helix 5	AA5	H	213	216	Right-handed 310
Helix 6	AA6	L	80	84	Right-handed 310
Helix 7	AA7	L	94	98	Right-handed 310
Helix 8	AA8	L	126	132	Right-handed alpha
Helix 9	AA9	L	186	193	Right-handed alpha
Helix 10	AB1	C	65	67	Right-handed 310
Helix 11	AB2	C	88	92	Right-handed 310
Helix 12	AB3	C	168	170	Right-handed 310
Helix 13	AB4	C	199	203	Right-handed 310
Helix 14	AB5	C	213	216	Right-handed 310
Helix 15	AB6	D	80	84	Right-handed 310
Helix 16	AB7	D	94	98	Right-handed 310
Helix 17	AB8	D	126	132	Right-handed alpha
Helix 18	AB9	D	186	193	Right-handed alpha
Helix 19	AC1	B	56	61	Right-handed alpha
Helix 20	AC2	B	97	105	Right-handed alpha
Helix 21	AC3	B	118	122	Right-handed 310
Helix 22	AC4	B	183	192	Right-handed alpha
Helix 23	AC5	A	56	63	Right-handed alpha
Helix 24	AC6	A	97	105	Right-handed alpha
Helix 25	AC7	A	118	122	Right-handed 310
Helix 26	AC8	A	183	192	Right-handed alpha

There are 33 sheets in PDB entry 6A67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	119	123	parallel
Strand 3	H	93	103	anti-parallel
Strand 4	H	35	41	anti-parallel
Strand 5	H	48	54	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	119	123	parallel
Strand 3	H	93	103	anti-parallel
Strand 4	H	109	115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	147	157	anti-parallel
Strand 3	H	188	197	anti-parallel
Strand 4	H	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	147	157	anti-parallel
Strand 3	H	188	197	anti-parallel
Strand 4	H	181	182	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	166	first strand
Strand 2	H	207	212	anti-parallel
Strand 3	H	217	222	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	99	102	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	164	166	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	170	171	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	160	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	205	211	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	93	103	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	C	48	53	anti-parallel
Strand 6	C	59	61	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	93	103	anti-parallel
Strand 4	C	109	115	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	147	157	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	175	177	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	147	157	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	181	182	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	217	222	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	110	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	49	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	106	110	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	99	102	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	71	76	anti-parallel
Strand 3	D	63	68	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	135	144	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	164	166	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	135	144	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	170	171	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	196	202	anti-parallel
Strand 4	D	205	211	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	225	233	parallel
Strand 3	B	171	180	anti-parallel
Strand 4	B	252	257	anti-parallel
Strand 5	B	109	115	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	225	233	parallel
Strand 3	B	171	180	anti-parallel
Strand 4	B	247	250	anti-parallel
Strand 5	B	147	149	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	140	142	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	165	first strand
Strand 2	B	238	243	anti-parallel
Strand 3	B	198	201	anti-parallel
Strand 4	B	206	209	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	79	80	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	225	233	parallel
Strand 3	A	171	180	anti-parallel
Strand 4	A	252	257	anti-parallel
Strand 5	A	109	115	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	225	233	parallel
Strand 3	A	171	180	anti-parallel
Strand 4	A	247	250	anti-parallel
Strand 5	A	147	149	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	140	142	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	165	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	198	201	anti-parallel
Strand 4	A	206	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6A67

Analysis of interatomic Contacts of Structural Units in PDB entry:
6A67