Analysis of interatomic Contacts of Structural Units in PDB entry:
6A82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6A82 entry

There are 3 chains in PDB entry 6A82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 221	GLN 577
B	ALA 221	GLN 577
C	ALA 221	GLN 577

There are 48 helices in PDB entry 6A82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	252	256	Right-handed 310
Helix 2	AA2	A	262	272	Right-handed alpha
Helix 3	AA3	A	287	296	Right-handed alpha
Helix 4	AA4	A	305	310	Right-handed alpha
Helix 5	AA5	A	312	320	Right-handed alpha
Helix 6	AA6	A	338	346	Right-handed alpha
Helix 7	AA7	A	364	367	Right-handed 310
Helix 8	AA8	A	368	377	Right-handed alpha
Helix 9	AA9	A	395	400	Right-handed 310
Helix 10	AB1	A	401	405	Right-handed 310
Helix 11	AB2	A	419	450	Right-handed alpha
Helix 12	AB3	A	483	487	Right-handed 310
Helix 13	AB4	A	496	503	Right-handed alpha
Helix 14	AB5	A	519	529	Right-handed alpha
Helix 15	AB6	A	536	540	Right-handed 310
Helix 16	AB7	A	566	568	Right-handed 310
Helix 17	AB8	B	252	256	Right-handed 310
Helix 18	AB9	B	262	272	Right-handed alpha
Helix 19	AC1	B	287	296	Right-handed alpha
Helix 20	AC2	B	305	310	Right-handed alpha
Helix 21	AC3	B	312	320	Right-handed alpha
Helix 22	AC4	B	338	346	Right-handed alpha
Helix 23	AC5	B	364	367	Right-handed 310
Helix 24	AC6	B	368	377	Right-handed alpha
Helix 25	AC7	B	395	400	Right-handed 310
Helix 26	AC8	B	401	405	Right-handed 310
Helix 27	AC9	B	419	450	Right-handed alpha
Helix 28	AD1	B	483	487	Right-handed 310
Helix 29	AD2	B	496	503	Right-handed alpha
Helix 30	AD3	B	519	529	Right-handed alpha
Helix 31	AD4	B	536	540	Right-handed 310
Helix 32	AD5	B	566	568	Right-handed 310
Helix 33	AD6	C	252	256	Right-handed 310
Helix 34	AD7	C	262	272	Right-handed alpha
Helix 35	AD8	C	287	296	Right-handed alpha
Helix 36	AD9	C	305	309	Right-handed 310
Helix 37	AE1	C	312	320	Right-handed alpha
Helix 38	AE2	C	338	346	Right-handed alpha
Helix 39	AE3	C	364	367	Right-handed 310
Helix 40	AE4	C	368	378	Right-handed alpha
Helix 41	AE5	C	395	400	Right-handed 310
Helix 42	AE6	C	401	405	Right-handed 310
Helix 43	AE7	C	419	450	Right-handed alpha
Helix 44	AE8	C	483	487	Right-handed 310
Helix 45	AE9	C	496	503	Right-handed alpha
Helix 46	AF1	C	519	529	Right-handed alpha
Helix 47	AF2	C	536	540	Right-handed 310
Helix 48	AF3	C	566	568	Right-handed 310

There are 15 sheets in PDB entry 6A82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	530	531	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	491	495	anti-parallel
Strand 3	A	454	460	anti-parallel
Strand 4	A	237	244	parallel
Strand 5	A	382	388	parallel
Strand 6	A	323	328	parallel
Strand 7	A	349	352	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	515	516	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	466	first strand
Strand 2	A	475	476	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	553	first strand
Strand 2	A	563	564	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	530	531	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	491	495	anti-parallel
Strand 3	B	454	460	anti-parallel
Strand 4	B	237	244	parallel
Strand 5	B	382	388	parallel
Strand 6	B	323	328	parallel
Strand 7	B	349	352	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	515	516	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	466	first strand
Strand 2	B	475	476	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	563	564	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	530	531	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	277	first strand
Strand 2	C	491	495	anti-parallel
Strand 3	C	454	460	anti-parallel
Strand 4	C	237	244	parallel
Strand 5	C	382	388	parallel
Strand 6	C	323	328	parallel
Strand 7	C	349	352	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	282	first strand
Strand 2	C	515	516	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	465	466	first strand
Strand 2	C	475	476	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	552	553	first strand
Strand 2	C	563	564	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6A82

Analysis of interatomic Contacts of Structural Units in PDB entry:
6A82