Analysis of interatomic Contacts of Structural Units in PDB entry:
6A8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A8C entry

There are 2 chains in PDB entry 6A8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3MET 329
B
 ARG 3MET 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6A8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 65Right-handed alpha
Helix 2
AA2
A
78 90Right-handed alpha
Helix 3
AA3
A
126 132Right-handed 310
Helix 4
AA4
A
133 141Right-handed alpha
Helix 5
AA5
A
162 176Right-handed alpha
Helix 6
AA6
A
189 197Right-handed alpha
Helix 7
AA7
A
198 203Right-handed 310
Helix 8
AA8
A
209 218Right-handed alpha
Helix 9
AA9
A
223 237Right-handed alpha
Helix 10
AB1
A
247 249Right-handed 310
Helix 11
AB2
A
275 290Right-handed alpha
Helix 12
AB3
A
293 310Right-handed alpha
Helix 13
AB4
A
313 318Right-handed 310
Helix 14
AB5
A
320 324Right-handed 310
Helix 15
AB6
B
53 65Right-handed alpha
Helix 16
AB7
B
78 90Right-handed alpha
Helix 17
AB8
B
126 132Right-handed 310
Helix 18
AB9
B
133 141Right-handed alpha
Helix 19
AC1
B
162 176Right-handed alpha
Helix 20
AC2
B
189 197Right-handed alpha
Helix 21
AC3
B
198 203Right-handed 310
Helix 22
AC4
B
209 218Right-handed alpha
Helix 23
AC5
B
223 237Right-handed alpha
Helix 24
AC6
B
247 249Right-handed 310
Helix 25
AC7
B
275 290Right-handed alpha
Helix 26
AC8
B
293 310Right-handed alpha
Helix 27
AC9
B
313 318Right-handed 310
Helix 28
AD1
B
320 324Right-handed 310
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There are 5 sheets in PDB entry 6A8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 101first strand
Strand 2
A
69 76parallel
Strand 3
A
18 21parallel
Strand 4
A
154 157parallel
Strand 5
A
179 182parallel
Strand 6
A
205 206parallel
Strand 7
A
241 245parallel
Strand 8
A
251 254anti-parallel
Strand 9
A
261 263anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
108 114parallel
Strand 4
A
119 125anti-parallel
Strand 5
B
41 43parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
B
119 125parallel
Strand 3
B
108 114anti-parallel
Strand 4
B
25 31parallel
Strand 5
B
46 52anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
69 76parallel
Strand 3
B
98 101parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
69 76parallel
Strand 3
B
18 21parallel
Strand 4
B
154 157parallel
Strand 5
B
179 182parallel
Strand 6
B
205 206parallel
Strand 7
B
241 245parallel
Strand 8
B
251 254anti-parallel
Strand 9
B
261 263anti-parallel
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