Analysis of interatomic Contacts of Structural Units in PDB entry:
6A8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6A8J entry

There are 3 chains in PDB entry 6A8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -4	SER 4069
B	GLY -4	ASP 4067
C	GLY -4	LEU 3936

There are 96 helices in PDB entry 6A8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3596	3606	Right-handed alpha
Helix 2	AA2	A	3610	3626	Right-handed alpha
Helix 3	AA3	A	3627	3649	Right-handed alpha
Helix 4	AA4	A	3654	3670	Right-handed alpha
Helix 5	AA5	A	3671	3676	Right-handed 310
Helix 6	AA6	A	3677	3685	Right-handed alpha
Helix 7	AA7	A	3688	3704	Right-handed alpha
Helix 8	AA8	A	3709	3721	Right-handed alpha
Helix 9	AA9	A	3722	3725	Right-handed 310
Helix 10	AB1	A	3751	3764	Right-handed alpha
Helix 11	AB2	A	3785	3791	Right-handed alpha
Helix 12	AB3	A	3795	3813	Right-handed alpha
Helix 13	AB4	A	3819	3828	Right-handed alpha
Helix 14	AB5	A	3830	3855	Right-handed alpha
Helix 15	AB6	A	3856	3865	Right-handed alpha
Helix 16	AB7	A	3866	3879	Right-handed alpha
Helix 17	AB8	A	3881	3890	Right-handed alpha
Helix 18	AB9	A	3906	3915	Right-handed alpha
Helix 19	AC1	A	3915	3923	Right-handed alpha
Helix 20	AC2	A	3934	3948	Right-handed alpha
Helix 21	AC3	A	3951	3961	Right-handed alpha
Helix 22	AC4	A	3964	3974	Right-handed alpha
Helix 23	AC5	A	3995	4014	Right-handed alpha
Helix 24	AC6	A	4043	4049	Right-handed alpha
Helix 25	AC7	B	-3	3606	Right-handed alpha
Helix 26	AC8	B	3612	3626	Right-handed alpha
Helix 27	AC9	B	3628	3649	Right-handed alpha
Helix 28	AD1	B	3654	3670	Right-handed alpha
Helix 29	AD2	B	3671	3676	Right-handed 310
Helix 30	AD3	B	3677	3686	Right-handed alpha
Helix 31	AD4	B	3688	3704	Right-handed alpha
Helix 32	AD5	B	3709	3721	Right-handed alpha
Helix 33	AD6	B	3722	3725	Right-handed 310
Helix 34	AD7	B	3751	3764	Right-handed alpha
Helix 35	AD8	B	3785	3791	Right-handed alpha
Helix 36	AD9	B	3795	3813	Right-handed alpha
Helix 37	AE1	B	3819	3829	Right-handed alpha
Helix 38	AE2	B	3830	3855	Right-handed alpha
Helix 39	AE3	B	3856	3865	Right-handed alpha
Helix 40	AE4	B	3866	3878	Right-handed alpha
Helix 41	AE5	B	3881	3890	Right-handed alpha
Helix 42	AE6	B	3906	3915	Right-handed alpha
Helix 43	AE7	B	3916	3921	Right-handed alpha
Helix 44	AE8	B	3934	3948	Right-handed alpha
Helix 45	AE9	B	3951	3961	Right-handed alpha
Helix 46	AF1	B	3964	3974	Right-handed alpha
Helix 47	AF2	B	3994	4014	Right-handed alpha
Helix 48	AF3	B	4043	4049	Right-handed alpha
Helix 49	AF4	C	-3	3606	Right-handed alpha
Helix 50	AF5	C	3610	3626	Right-handed alpha
Helix 51	AF6	C	3628	3649	Right-handed alpha
Helix 52	AF7	C	3654	3670	Right-handed alpha
Helix 53	AF8	C	3671	3676	Right-handed 310
Helix 54	AF9	C	3677	3686	Right-handed alpha
Helix 55	AG1	C	3688	3703	Right-handed alpha
Helix 56	AG2	C	3709	3721	Right-handed alpha
Helix 57	AG3	C	3722	3725	Right-handed 310
Helix 58	AG4	C	3751	3764	Right-handed alpha
Helix 59	AG5	C	3785	3792	Right-handed alpha
Helix 60	AG6	C	3795	3813	Right-handed alpha
Helix 61	AG7	C	3819	3828	Right-handed alpha
Helix 62	AG8	C	3830	3855	Right-handed alpha
Helix 63	AG9	C	3856	3865	Right-handed alpha
Helix 64	AH1	C	3866	3878	Right-handed alpha
Helix 65	AH2	C	3881	3890	Right-handed alpha
Helix 66	AH3	C	3906	3915	Right-handed alpha
Helix 67	AH4	C	3915	3922	Right-handed alpha
Helix 68	AH5	C	3934	3948	Right-handed alpha
Helix 69	AH6	C	3951	3961	Right-handed alpha
Helix 70	AH7	C	3965	3974	Right-handed alpha
Helix 71	AH8	C	3994	4014	Right-handed alpha
Helix 72	AH9	C	4043	4048	Right-handed alpha
Helix 73	AI1	D	3596	3606	Right-handed alpha
Helix 74	AI2	D	3610	3626	Right-handed alpha
Helix 75	AI3	D	3628	3649	Right-handed alpha
Helix 76	AI4	D	3654	3670	Right-handed alpha
Helix 77	AI5	D	3671	3676	Right-handed 310
Helix 78	AI6	D	3677	3685	Right-handed alpha
Helix 79	AI7	D	3688	3704	Right-handed alpha
Helix 80	AI8	D	3709	3721	Right-handed alpha
Helix 81	AI9	D	3722	3725	Right-handed 310
Helix 82	AJ1	D	3751	3764	Right-handed alpha
Helix 83	AJ2	D	3785	3791	Right-handed alpha
Helix 84	AJ3	D	3795	3813	Right-handed alpha
Helix 85	AJ4	D	3819	3828	Right-handed alpha
Helix 86	AJ5	D	3830	3855	Right-handed alpha
Helix 87	AJ6	D	3856	3865	Right-handed alpha
Helix 88	AJ7	D	3866	3878	Right-handed alpha
Helix 89	AJ8	D	3884	3890	Right-handed alpha
Helix 90	AJ9	D	3906	3915	Right-handed alpha
Helix 91	AK1	D	3915	3922	Right-handed alpha
Helix 92	AK2	D	3934	3948	Right-handed alpha
Helix 93	AK3	D	3951	3961	Right-handed alpha
Helix 94	AK4	D	3964	3974	Right-handed alpha
Helix 95	AK5	D	3994	4014	Right-handed alpha
Helix 96	AK6	D	4043	4048	Right-handed alpha

There are 16 sheets in PDB entry 6A8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3744	3747	first strand
Strand 2	A	3779	3782	anti-parallel
Strand 3	A	3771	3774	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3895	3900	first strand
Strand 2	A	4021	4027	parallel
Strand 3	A	3924	3933	parallel
Strand 4	A	3977	3982	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4034	4036	first strand
Strand 2	A	4039	4041	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4052	4055	first strand
Strand 2	A	4061	4064	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3744	3747	first strand
Strand 2	B	3779	3782	anti-parallel
Strand 3	B	3771	3774	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3895	3900	first strand
Strand 2	B	4021	4027	parallel
Strand 3	B	3924	3933	parallel
Strand 4	B	3977	3982	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4034	4035	first strand
Strand 2	B	4040	4041	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4052	4055	first strand
Strand 2	B	4061	4064	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3744	3747	first strand
Strand 2	C	3779	3782	anti-parallel
Strand 3	C	3771	3774	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3896	3900	first strand
Strand 2	C	4021	4027	parallel
Strand 3	C	3924	3933	parallel
Strand 4	C	3977	3982	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4034	4036	first strand
Strand 2	C	4039	4041	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4052	4055	first strand
Strand 2	C	4061	4064	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3744	3747	first strand
Strand 2	D	3779	3782	anti-parallel
Strand 3	D	3771	3774	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3895	3900	first strand
Strand 2	D	4021	4027	parallel
Strand 3	D	3924	3933	parallel
Strand 4	D	3977	3982	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4034	4035	first strand
Strand 2	D	4040	4041	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4052	4055	first strand
Strand 2	D	4061	4064	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6A8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6A8J