Analysis of interatomic Contacts of Structural Units in PDB entry:
6A8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A8M entry

There is 1 chain in PDB entry 6A8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4PHE 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6A8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 23Right-handed alpha
Helix 2
AA2
A
24 26Right-handed 310
Helix 3
AA3
A
47 58Right-handed alpha
Helix 4
AA4
A
78 96Right-handed alpha
Helix 5
AA5
A
112 129Right-handed alpha
Helix 6
AA6
A
142 159Right-handed alpha
Helix 7
AA7
A
166 175Right-handed alpha
Helix 8
AA8
A
178 209Right-handed alpha
Helix 9
AA9
A
214 225Right-handed alpha
Helix 10
AB1
A
228 234Right-handed alpha
Helix 11
AB2
A
235 240Right-handed alpha
Helix 12
AB3
A
241 243Right-handed 310
Helix 13
AB4
A
250 252Right-handed 310
Helix 14
AB5
A
311 331Right-handed alpha
Helix 15
AB6
A
338 354Right-handed alpha
Helix 16
AB7
A
355 358Right-handed 310
Helix 17
AB8
A
437 441Right-handed alpha
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There are 4 sheets in PDB entry 6A8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 106first strand
Strand 2
A
72 77parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
131 134parallel
Strand 6
A
162 165parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
293 295anti-parallel
Strand 3
A
298 299anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
285 291anti-parallel
Strand 3
A
302 308anti-parallel
Strand 4
A
442 443parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 381first strand
Strand 2
A
364 368anti-parallel
Strand 3
A
394 405anti-parallel
Strand 4
A
412 424anti-parallel
Strand 5
A
427 430anti-parallel
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