Analysis of interatomic Contacts of Structural Units in PDB entry:
6A8P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6A8P entry

There are 3 chains in PDB entry 6A8P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 688
B	GLU 8	HIS 692
C	MET 1	ALA 687

There are 42 helices in PDB entry 6A8P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	21	Right-handed alpha
Helix 2	AA2	A	152	160	Right-handed alpha
Helix 3	AA3	A	188	199	Right-handed alpha
Helix 4	AA4	A	200	206	Right-handed alpha
Helix 5	AA5	A	207	214	Right-handed alpha
Helix 6	AA6	A	216	229	Right-handed alpha
Helix 7	AA7	A	250	254	Right-handed 310
Helix 8	AA8	A	257	267	Right-handed alpha
Helix 9	AA9	A	276	292	Right-handed alpha
Helix 10	AB1	A	376	382	Right-handed alpha
Helix 11	AB2	A	389	399	Right-handed alpha
Helix 12	AB3	A	439	444	Right-handed alpha
Helix 13	AB4	A	449	459	Right-handed alpha
Helix 14	AB5	A	547	552	Right-handed alpha
Helix 15	AB6	B	13	21	Right-handed alpha
Helix 16	AB7	B	152	160	Right-handed alpha
Helix 17	AB8	B	188	199	Right-handed alpha
Helix 18	AB9	B	200	206	Right-handed alpha
Helix 19	AC1	B	206	214	Right-handed alpha
Helix 20	AC2	B	216	229	Right-handed alpha
Helix 21	AC3	B	250	254	Right-handed 310
Helix 22	AC4	B	257	267	Right-handed alpha
Helix 23	AC5	B	276	291	Right-handed alpha
Helix 24	AC6	B	376	382	Right-handed alpha
Helix 25	AC7	B	389	399	Right-handed alpha
Helix 26	AC8	B	439	444	Right-handed alpha
Helix 27	AC9	B	449	459	Right-handed alpha
Helix 28	AD1	B	547	552	Right-handed alpha
Helix 29	AD2	C	13	21	Right-handed alpha
Helix 30	AD3	C	152	160	Right-handed alpha
Helix 31	AD4	C	188	199	Right-handed alpha
Helix 32	AD5	C	200	207	Right-handed alpha
Helix 33	AD6	C	207	214	Right-handed alpha
Helix 34	AD7	C	216	229	Right-handed alpha
Helix 35	AD8	C	250	254	Right-handed 310
Helix 36	AD9	C	257	267	Right-handed alpha
Helix 37	AE1	C	276	291	Right-handed alpha
Helix 38	AE2	C	376	382	Right-handed alpha
Helix 39	AE3	C	389	399	Right-handed alpha
Helix 40	AE4	C	439	444	Right-handed alpha
Helix 41	AE5	C	449	459	Right-handed alpha
Helix 42	AE6	C	547	553	Right-handed alpha

There are 27 sheets in PDB entry 6A8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	39	45	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	89	96	anti-parallel
Strand 5	A	74	80	parallel
Strand 6	A	55	62	anti-parallel
Strand 7	A	113	123	anti-parallel
Strand 8	A	126	138	anti-parallel
Strand 9	A	31	34	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	170	first strand
Strand 2	A	175	181	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	272	275	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	375	first strand
Strand 2	A	353	364	anti-parallel
Strand 3	A	332	342	anti-parallel
Strand 4	A	295	303	anti-parallel
Strand 5	A	424	429	anti-parallel
Strand 6	A	436	438	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	317	first strand
Strand 2	A	400	406	parallel
Strand 3	A	412	414	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	574	583	parallel
Strand 3	A	560	569	anti-parallel
Strand 4	A	503	514	anti-parallel
Strand 5	A	520	534	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	479	first strand
Strand 2	A	489	497	anti-parallel
Strand 3	A	538	546	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	594	first strand
Strand 2	A	603	610	anti-parallel
Strand 3	A	647	654	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	637	first strand
Strand 2	A	621	625	anti-parallel
Strand 3	A	660	669	anti-parallel
Strand 4	A	676	684	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	99	105	anti-parallel
Strand 4	B	89	96	anti-parallel
Strand 5	B	74	80	parallel
Strand 6	B	58	62	anti-parallel
Strand 7	B	113	120	anti-parallel
Strand 8	B	130	138	anti-parallel
Strand 9	B	32	34	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	170	first strand
Strand 2	B	175	181	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	272	275	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	375	first strand
Strand 2	B	353	358	anti-parallel
Strand 3	B	332	342	anti-parallel
Strand 4	B	295	303	anti-parallel
Strand 5	B	424	429	anti-parallel
Strand 6	B	436	438	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	317	first strand
Strand 2	B	400	406	parallel
Strand 3	B	412	414	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	574	583	parallel
Strand 3	B	560	569	anti-parallel
Strand 4	B	503	514	anti-parallel
Strand 5	B	520	534	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	479	first strand
Strand 2	B	489	497	anti-parallel
Strand 3	B	538	546	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	594	first strand
Strand 2	B	603	610	anti-parallel
Strand 3	B	647	654	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	637	first strand
Strand 2	B	621	625	anti-parallel
Strand 3	B	660	669	anti-parallel
Strand 4	B	676	684	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	11	first strand
Strand 2	C	39	46	anti-parallel
Strand 3	C	99	105	anti-parallel
Strand 4	C	89	96	anti-parallel
Strand 5	C	74	80	parallel
Strand 6	C	58	62	anti-parallel
Strand 7	C	113	120	anti-parallel
Strand 8	C	129	138	anti-parallel
Strand 9	C	31	34	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	170	first strand
Strand 2	C	175	181	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	272	275	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	375	first strand
Strand 2	C	353	363	anti-parallel
Strand 3	C	332	342	anti-parallel
Strand 4	C	295	303	anti-parallel
Strand 5	C	424	429	anti-parallel
Strand 6	C	436	438	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	317	first strand
Strand 2	C	400	406	parallel
Strand 3	C	412	414	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	417	first strand
Strand 2	C	574	583	parallel
Strand 3	C	560	569	anti-parallel
Strand 4	C	503	514	anti-parallel
Strand 5	C	520	534	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	479	first strand
Strand 2	C	489	497	anti-parallel
Strand 3	C	538	546	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	594	first strand
Strand 2	C	603	610	anti-parallel
Strand 3	C	647	654	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	637	first strand
Strand 2	C	621	625	anti-parallel
Strand 3	C	660	669	anti-parallel
Strand 4	C	676	684	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6A8P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6A8P