Analysis of interatomic Contacts of Structural Units in PDB entry:
6A96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6A96 entry

There are 8 chains in PDB entry 6A96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	GLN 1	SER 125
L	GLN 1	SER 124
O	GLN 1	SER 125
B	ASN 8	VAL 447
A	ASN 14	ARG 420
E	ASN 8	VAL 447
C	ASN 8	VAL 447
D	ASN 8	VAL 447

There are 60 helices in PDB entry 6A96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	27	31	Right-handed 310
Helix 2	AA2	K	87	91	Right-handed 310
Helix 3	AA3	K	108	112	Right-handed 310
Helix 4	AA4	L	87	91	Right-handed 310
Helix 5	AA5	L	108	112	Right-handed 310
Helix 6	AA6	O	27	31	Right-handed 310
Helix 7	AA7	O	87	91	Right-handed 310
Helix 8	AA8	B	9	21	Right-handed alpha
Helix 9	AA9	B	84	91	Right-handed 310
Helix 10	AB1	B	220	225	Right-handed alpha
Helix 11	AB2	B	225	236	Right-handed alpha
Helix 12	AB3	B	237	242	Right-handed alpha
Helix 13	AB4	B	243	245	Right-handed 310
Helix 14	AB5	B	246	267	Right-handed alpha
Helix 15	AB6	B	268	272	Right-handed 310
Helix 16	AB7	B	279	306	Right-handed alpha
Helix 17	AB8	B	309	428	Right-handed alpha
Helix 18	AB9	B	430	446	Right-handed alpha
Helix 19	AC1	A	15	27	Right-handed alpha
Helix 20	AC2	A	92	97	Right-handed alpha
Helix 21	AC3	A	228	233	Right-handed alpha
Helix 22	AC4	A	233	246	Right-handed alpha
Helix 23	AC5	A	247	250	Right-handed 310
Helix 24	AC6	A	256	277	Right-handed alpha
Helix 25	AC7	A	289	314	Right-handed alpha
Helix 26	AC8	A	320	399	Right-handed alpha
Helix 27	AC9	A	401	418	Right-handed alpha
Helix 28	AD1	E	9	21	Right-handed alpha
Helix 29	AD2	E	84	91	Right-handed 310
Helix 30	AD3	E	220	225	Right-handed alpha
Helix 31	AD4	E	225	236	Right-handed alpha
Helix 32	AD5	E	237	242	Right-handed alpha
Helix 33	AD6	E	243	245	Right-handed 310
Helix 34	AD7	E	246	267	Right-handed alpha
Helix 35	AD8	E	268	272	Right-handed 310
Helix 36	AD9	E	279	306	Right-handed alpha
Helix 37	AE1	E	309	428	Right-handed alpha
Helix 38	AE2	E	430	446	Right-handed alpha
Helix 39	AE3	C	9	21	Right-handed alpha
Helix 40	AE4	C	84	91	Right-handed 310
Helix 41	AE5	C	220	225	Right-handed alpha
Helix 42	AE6	C	225	236	Right-handed alpha
Helix 43	AE7	C	237	242	Right-handed alpha
Helix 44	AE8	C	243	245	Right-handed 310
Helix 45	AE9	C	246	267	Right-handed alpha
Helix 46	AF1	C	268	272	Right-handed 310
Helix 47	AF2	C	279	306	Right-handed alpha
Helix 48	AF3	C	309	428	Right-handed alpha
Helix 49	AF4	C	430	446	Right-handed alpha
Helix 50	AF5	D	9	21	Right-handed alpha
Helix 51	AF6	D	84	91	Right-handed 310
Helix 52	AF7	D	220	225	Right-handed alpha
Helix 53	AF8	D	225	236	Right-handed alpha
Helix 54	AF9	D	237	242	Right-handed alpha
Helix 55	AG1	D	243	245	Right-handed 310
Helix 56	AG2	D	246	267	Right-handed alpha
Helix 57	AG3	D	268	272	Right-handed 310
Helix 58	AG4	D	279	306	Right-handed alpha
Helix 59	AG5	D	309	428	Right-handed alpha
Helix 60	AG6	D	430	446	Right-handed alpha

There are 26 sheets in PDB entry 6A96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	7	first strand
Strand 2	K	21	23	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	122	123	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	19	first strand
Strand 2	K	78	84	anti-parallel
Strand 3	K	69	73	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	60	first strand
Strand 2	K	49	51	anti-parallel
Strand 3	K	33	36	anti-parallel
Strand 4	K	96	99	anti-parallel
Strand 5	K	115	116	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	21	22	anti-parallel
Strand 3	L	79	83	anti-parallel
Strand 4	L	68	70	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	122	124	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	60	first strand
Strand 2	L	46	51	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	93	98	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	7	first strand
Strand 2	O	20	25	anti-parallel
Strand 3	O	78	81	anti-parallel
Strand 4	O	70	73	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	13	first strand
Strand 2	O	120	124	parallel
Strand 3	O	92	93	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	58	60	first strand
Strand 2	O	45	51	anti-parallel
Strand 3	O	33	39	anti-parallel
Strand 4	O	96	99	anti-parallel
Strand 5	O	115	116	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	115	117	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	38	51	anti-parallel
Strand 6	B	166	168	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	38	51	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	147	155	anti-parallel
Strand 3	B	204	216	anti-parallel
Strand 4	B	186	199	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	62	74	anti-parallel
Strand 3	A	42	50	anti-parallel
Strand 4	A	170	174	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	129	141	anti-parallel
Strand 3	A	62	74	anti-parallel
Strand 4	A	42	50	anti-parallel
Strand 5	A	182	184	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	122	124	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	215	224	anti-parallel
Strand 3	A	194	204	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	83	first strand
Strand 2	E	115	117	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	38	51	anti-parallel
Strand 6	E	166	168	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	38	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	147	155	anti-parallel
Strand 3	E	204	216	anti-parallel
Strand 4	E	186	199	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	115	117	anti-parallel
Strand 3	C	123	135	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	38	51	anti-parallel
Strand 6	C	166	168	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	123	135	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	38	51	anti-parallel
Strand 5	C	175	176	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	147	155	anti-parallel
Strand 3	C	204	216	anti-parallel
Strand 4	C	186	199	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	115	117	anti-parallel
Strand 3	D	123	135	anti-parallel
Strand 4	D	56	68	anti-parallel
Strand 5	D	38	51	anti-parallel
Strand 6	D	166	168	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	123	135	anti-parallel
Strand 3	D	56	68	anti-parallel
Strand 4	D	38	51	anti-parallel
Strand 5	D	175	176	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	147	155	anti-parallel
Strand 3	D	204	216	anti-parallel
Strand 4	D	186	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6A96

Analysis of interatomic Contacts of Structural Units in PDB entry:
6A96