Analysis of interatomic Contacts of Structural Units in PDB entry:
6A9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A9J entry

There are 2 chains in PDB entry 6A9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2MET 379
B
 MET 1MET 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6A9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
38 51Right-handed alpha
Helix 3
AA3
A
59 81Right-handed alpha
Helix 4
AA4
A
83 90Right-handed alpha
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
107 112Right-handed alpha
Helix 7
AA7
A
114 123Right-handed alpha
Helix 8
AA8
A
125 134Right-handed alpha
Helix 9
AA9
A
136 142Right-handed alpha
Helix 10
AB1
A
142 156Right-handed alpha
Helix 11
AB2
A
158 184Right-handed alpha
Helix 12
AB3
A
189 199Right-handed alpha
Helix 13
AB4
A
210 218Right-handed alpha
Helix 14
AB5
A
239 242Right-handed 310
Helix 15
AB6
A
282 293Right-handed alpha
Helix 16
AB7
A
293 305Right-handed alpha
Helix 17
AB8
A
317 328Right-handed alpha
Helix 18
AB9
B
2 12Right-handed alpha
Helix 19
AC1
B
40 51Right-handed alpha
Helix 20
AC2
B
59 81Right-handed alpha
Helix 21
AC3
B
83 90Right-handed alpha
Helix 22
AC4
B
92 107Right-handed alpha
Helix 23
AC5
B
107 112Right-handed alpha
Helix 24
AC6
B
114 123Right-handed alpha
Helix 25
AC7
B
125 134Right-handed alpha
Helix 26
AC8
B
136 142Right-handed alpha
Helix 27
AC9
B
142 156Right-handed alpha
Helix 28
AD1
B
158 184Right-handed alpha
Helix 29
AD2
B
189 199Right-handed alpha
Helix 30
AD3
B
210 219Right-handed alpha
Helix 31
AD4
B
282 305Right-handed alpha
Helix 32
AD5
B
317 328Right-handed alpha
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There are 5 sheets in PDB entry 6A9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
25 27anti-parallel
Strand 3
A
31 34anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
224 237anti-parallel
Strand 3
A
247 259anti-parallel
Strand 4
A
329 340parallel
Strand 5
A
349 360anti-parallel
Strand 6
A
368 373anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
224 237anti-parallel
Strand 3
A
247 259anti-parallel
Strand 4
A
329 340parallel
Strand 5
A
349 360anti-parallel
Strand 6
A
376 378anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
25 27anti-parallel
Strand 3
B
31 32anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 208first strand
Strand 2
B
224 237anti-parallel
Strand 3
B
247 259anti-parallel
Strand 4
B
329 340parallel
Strand 5
B
349 359anti-parallel
Strand 6
B
369 378anti-parallel
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