Analysis of interatomic Contacts of Structural Units in PDB entry:
6AAA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AAA entry

There are 2 chains in PDB entry 6AAA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 5	LYS 544
B	ASP 5	LEU 540

There are 35 helices in PDB entry 6AAA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	36	Right-handed alpha
Helix 2	AA2	A	54	72	Right-handed alpha
Helix 3	AA3	A	90	99	Right-handed alpha
Helix 4	AA4	A	111	123	Right-handed alpha
Helix 5	AA5	A	133	142	Right-handed alpha
Helix 6	AA6	A	165	173	Right-handed alpha
Helix 7	AA7	A	212	223	Right-handed alpha
Helix 8	AA8	A	245	258	Right-handed alpha
Helix 9	AA9	A	269	280	Right-handed alpha
Helix 10	AB1	A	289	298	Right-handed alpha
Helix 11	AB2	A	300	304	Right-handed 310
Helix 12	AB3	A	320	331	Right-handed alpha
Helix 13	AB4	A	343	346	Right-handed 310
Helix 14	AB5	A	404	412	Right-handed alpha
Helix 15	AB6	A	451	461	Right-handed alpha
Helix 16	AB7	A	494	504	Right-handed alpha
Helix 17	AB8	A	531	543	Right-handed alpha
Helix 18	AB9	B	22	36	Right-handed alpha
Helix 19	AC1	B	54	72	Right-handed alpha
Helix 20	AC2	B	90	99	Right-handed alpha
Helix 21	AC3	B	111	123	Right-handed alpha
Helix 22	AC4	B	133	144	Right-handed alpha
Helix 23	AC5	B	165	173	Right-handed alpha
Helix 24	AC6	B	212	223	Right-handed alpha
Helix 25	AC7	B	245	259	Right-handed alpha
Helix 26	AC8	B	269	280	Right-handed alpha
Helix 27	AC9	B	288	298	Right-handed alpha
Helix 28	AD1	B	299	304	Right-handed 310
Helix 29	AD2	B	320	331	Right-handed alpha
Helix 30	AD3	B	343	346	Right-handed 310
Helix 31	AD4	B	404	412	Right-handed alpha
Helix 32	AD5	B	450	460	Right-handed alpha
Helix 33	AD6	B	494	504	Right-handed alpha
Helix 34	AD7	B	507	511	Right-handed 310
Helix 35	AD8	B	531	539	Right-handed alpha

There are 13 sheets in PDB entry 6AAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	370	374	anti-parallel
Strand 3	A	388	393	anti-parallel
Strand 4	A	418	426	anti-parallel
Strand 5	A	432	435	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	41	45	anti-parallel
Strand 3	A	261	264	parallel
Strand 4	A	236	239	parallel
Strand 5	A	284	287	parallel
Strand 6	A	311	314	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	106	first strand
Strand 2	A	78	82	parallel
Strand 3	A	126	129	parallel
Strand 4	A	149	152	parallel
Strand 5	A	163	164	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	198	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	400	401	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	348	351	anti-parallel
Strand 3	A	364	365	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	473	first strand
Strand 2	A	479	487	anti-parallel
Strand 3	A	516	518	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	10	first strand
Strand 2	B	370	374	anti-parallel
Strand 3	B	388	393	anti-parallel
Strand 4	B	418	426	anti-parallel
Strand 5	B	432	435	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	41	45	anti-parallel
Strand 3	B	261	264	parallel
Strand 4	B	236	239	parallel
Strand 5	B	284	287	parallel
Strand 6	B	311	314	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	78	82	parallel
Strand 3	B	126	129	parallel
Strand 4	B	149	152	parallel
Strand 5	B	163	164	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	199	first strand
Strand 2	B	205	211	anti-parallel
Strand 3	B	400	401	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	348	351	anti-parallel
Strand 3	B	364	365	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	447	449	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	473	first strand
Strand 2	B	479	487	anti-parallel
Strand 3	B	515	518	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AAA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AAA