Analysis of interatomic Contacts of Structural Units in PDB entry:
6AAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AAV entry

There are 2 chains in PDB entry 6AAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	GLY 538
B	GLN 3	ARG 537

There are 43 helices in PDB entry 6AAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	30	44	Right-handed alpha
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	109	116	Right-handed alpha
Helix 5	AA5	A	176	193	Right-handed alpha
Helix 6	AA6	A	202	206	Right-handed 310
Helix 7	AA7	A	219	223	Right-handed 310
Helix 8	AA8	A	232	237	Right-handed 310
Helix 9	AA9	A	247	261	Right-handed alpha
Helix 10	AB1	A	275	284	Right-handed alpha
Helix 11	AB2	A	303	318	Right-handed alpha
Helix 12	AB3	A	334	341	Right-handed alpha
Helix 13	AB4	A	345	358	Right-handed alpha
Helix 14	AB5	A	368	372	Right-handed 310
Helix 15	AB6	A	379	383	Right-handed 310
Helix 16	AB7	A	385	392	Right-handed alpha
Helix 17	AB8	A	398	402	Right-handed 310
Helix 18	AB9	A	425	430	Right-handed alpha
Helix 19	AC1	A	432	437	Right-handed alpha
Helix 20	AC2	A	442	456	Right-handed alpha
Helix 21	AC3	A	457	462	Right-handed alpha
Helix 22	AC4	B	16	20	Right-handed 310
Helix 23	AC5	B	30	44	Right-handed alpha
Helix 24	AC6	B	78	92	Right-handed alpha
Helix 25	AC7	B	109	116	Right-handed alpha
Helix 26	AC8	B	123	127	Right-handed 310
Helix 27	AC9	B	176	192	Right-handed alpha
Helix 28	AD1	B	202	206	Right-handed 310
Helix 29	AD2	B	219	223	Right-handed 310
Helix 30	AD3	B	232	237	Right-handed 310
Helix 31	AD4	B	247	261	Right-handed alpha
Helix 32	AD5	B	275	284	Right-handed alpha
Helix 33	AD6	B	303	318	Right-handed alpha
Helix 34	AD7	B	334	341	Right-handed alpha
Helix 35	AD8	B	345	359	Right-handed alpha
Helix 36	AD9	B	368	372	Right-handed 310
Helix 37	AE1	B	379	383	Right-handed 310
Helix 38	AE2	B	385	392	Right-handed alpha
Helix 39	AE3	B	398	402	Right-handed 310
Helix 40	AE4	B	425	431	Right-handed alpha
Helix 41	AE5	B	432	437	Right-handed alpha
Helix 42	AE6	B	442	456	Right-handed alpha
Helix 43	AE7	B	457	462	Right-handed alpha

There are 12 sheets in PDB entry 6AAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	15	first strand
Strand 2	A	48	51	parallel
Strand 3	A	95	100	parallel
Strand 4	A	197	200	parallel
Strand 5	A	266	270	parallel
Strand 6	A	291	293	parallel
Strand 7	A	322	326	parallel
Strand 8	A	362	366	parallel
Strand 9	A	11	15	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	160	162	anti-parallel
Strand 3	A	151	153	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	467	first strand
Strand 2	A	474	481	anti-parallel
Strand 3	A	484	491	anti-parallel
Strand 4	A	530	536	anti-parallel
Strand 5	A	506	509	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	467	first strand
Strand 2	A	474	481	anti-parallel
Strand 3	A	484	491	anti-parallel
Strand 4	A	530	536	anti-parallel
Strand 5	A	515	516	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	500	first strand
Strand 2	A	523	526	anti-parallel
Strand 3	A	518	520	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	48	51	parallel
Strand 3	B	95	100	parallel
Strand 4	B	197	200	parallel
Strand 5	B	266	270	parallel
Strand 6	B	291	293	parallel
Strand 7	B	322	326	parallel
Strand 8	B	362	366	parallel
Strand 9	B	11	15	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	160	162	anti-parallel
Strand 3	B	151	153	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	468	first strand
Strand 2	B	474	481	anti-parallel
Strand 3	B	484	491	anti-parallel
Strand 4	B	530	536	anti-parallel
Strand 5	B	506	509	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	468	first strand
Strand 2	B	474	481	anti-parallel
Strand 3	B	484	491	anti-parallel
Strand 4	B	530	536	anti-parallel
Strand 5	B	515	516	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	500	first strand
Strand 2	B	523	526	anti-parallel
Strand 3	B	518	520	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AAV