Analysis of interatomic Contacts of Structural Units in PDB entry:
6AAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AAY entry

There are 2 chains in PDB entry 6AAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10LEU 1225
B
 A 1 A 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6AAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 48Right-handed alpha
Helix 2
AA2
A
55 61Right-handed alpha
Helix 3
AA3
A
66 79Right-handed alpha
Helix 4
AA4
A
81 86Right-handed 310
Helix 5
AA5
A
93 121Right-handed alpha
Helix 6
AA6
A
133 152Right-handed alpha
Helix 7
AA7
A
155 166Right-handed alpha
Helix 8
AA8
A
166 197Right-handed alpha
Helix 9
AA9
A
212 226Right-handed alpha
Helix 10
AB1
A
262 272Right-handed alpha
Helix 11
AB2
A
275 283Right-handed alpha
Helix 12
AB3
A
284 286Right-handed 310
Helix 13
AB4
A
309 320Right-handed alpha
Helix 14
AB5
A
349 365Right-handed alpha
Helix 15
AB6
A
368 373Right-handed alpha
Helix 16
AB7
A
376 381Right-handed alpha
Helix 17
AB8
A
387 393Right-handed alpha
Helix 18
AB9
A
418 432Right-handed alpha
Helix 19
AC1
A
470 485Right-handed alpha
Helix 20
AC2
A
543 556Right-handed alpha
Helix 21
AC3
A
568 577Right-handed alpha
Helix 22
AC4
A
602 617Right-handed alpha
Helix 23
AC5
A
620 625Right-handed alpha
Helix 24
AC6
A
625 654Right-handed alpha
Helix 25
AC7
A
659 663Right-handed 310
Helix 26
AC8
A
674 718Right-handed alpha
Helix 27
AC9
A
721 736Right-handed alpha
Helix 28
AD1
A
747 764Right-handed alpha
Helix 29
AD2
A
767 773Right-handed alpha
Helix 30
AD3
A
775 788Right-handed alpha
Helix 31
AD4
A
789 791Right-handed 310
Helix 32
AD5
A
792 800Right-handed alpha
Helix 33
AD6
A
801 807Right-handed alpha
Helix 34
AD7
A
820 846Right-handed alpha
Helix 35
AD8
A
849 861Right-handed alpha
Helix 36
AD9
A
865 870Right-handed 310
Helix 37
AE1
A
873 883Right-handed alpha
Helix 38
AE2
A
908 912Right-handed 310
Helix 39
AE3
A
913 921Right-handed alpha
Helix 40
AE4
A
926 930Right-handed 310
Helix 41
AE5
A
942 974Right-handed alpha
Helix 42
AE6
A
983 987Right-handed 310
Helix 43
AE7
A
990 1004Right-handed alpha
Helix 44
AE8
A
1011 1014Right-handed 310
Helix 45
AE9
A
1035 1041Right-handed alpha
Helix 46
AF1
A
1042 1044Right-handed 310
Helix 47
AF2
A
1045 1055Right-handed alpha
Helix 48
AF3
A
1077 1092Right-handed alpha
Helix 49
AF4
A
1092 1107Right-handed alpha
Helix 50
AF5
A
1111 1113Right-handed 310
Helix 51
AF6
A
1121 1129Right-handed alpha
Helix 52
AF7
A
1134 1138Right-handed 310
Helix 53
AF8
A
1155 1163Right-handed alpha
Helix 54
AF9
A
1164 1182Right-handed alpha
Helix 55
AG1
A
1187 1198Right-handed alpha
Helix 56
AG2
A
1206 1223Right-handed alpha
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There are 6 sheets in PDB entry 6AAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
235 236anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
409 411anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 468first strand
Strand 2
A
437 452anti-parallel
Strand 3
A
502 503anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
437 452anti-parallel
Strand 3
A
534 538anti-parallel
Strand 4
A
596 599anti-parallel
Strand 5
A
886 887parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1021first strand
Strand 2
A
1026 1032anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1115 1116first strand
Strand 2
A
1119 1120anti-parallel
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