Analysis of interatomic Contacts of Structural Units in PDB entry:
6AB6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AB6 entry

There are 3 chains in PDB entry 6AB6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 66	SER 368
B	ILE 66	SER 368
C	ARG 31	THR 367

There are 15 helices in PDB entry 6AB6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	92	Right-handed 310
Helix 2	AA2	A	108	115	Right-handed alpha
Helix 3	AA3	A	152	156	Right-handed 310
Helix 4	AA4	A	160	168	Right-handed alpha
Helix 5	AA5	B	89	92	Right-handed 310
Helix 6	AA6	B	101	105	Right-handed 310
Helix 7	AA7	B	108	115	Right-handed alpha
Helix 8	AA8	B	152	156	Right-handed 310
Helix 9	AA9	B	160	169	Right-handed alpha
Helix 10	AB1	B	202	207	Right-handed alpha
Helix 11	AB2	C	89	92	Right-handed 310
Helix 12	AB3	C	108	115	Right-handed alpha
Helix 13	AB4	C	152	156	Right-handed 310
Helix 14	AB5	C	160	168	Right-handed alpha
Helix 15	AB6	C	202	206	Right-handed 310

There are 15 sheets in PDB entry 6AB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	73	first strand
Strand 2	A	231	245	anti-parallel
Strand 3	A	126	131	anti-parallel
Strand 4	A	181	184	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	231	245	anti-parallel
Strand 3	A	119	122	anti-parallel
Strand 4	A	194	195	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	140	146	anti-parallel
Strand 4	A	173	176	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	264	first strand
Strand 2	A	360	366	anti-parallel
Strand 3	A	289	293	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	279	first strand
Strand 2	A	344	350	anti-parallel
Strand 3	A	307	312	anti-parallel
Strand 4	A	316	323	anti-parallel
Strand 5	A	328	335	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	81	first strand
Strand 2	B	231	245	anti-parallel
Strand 3	B	119	131	anti-parallel
Strand 4	B	182	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	81	first strand
Strand 2	B	231	245	anti-parallel
Strand 3	B	119	131	anti-parallel
Strand 4	B	194	195	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	99	first strand
Strand 2	B	210	215	anti-parallel
Strand 3	B	140	146	anti-parallel
Strand 4	B	173	176	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	264	first strand
Strand 2	B	360	366	anti-parallel
Strand 3	B	287	293	anti-parallel
Strand 4	B	334	337	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	279	first strand
Strand 2	B	344	350	anti-parallel
Strand 3	B	307	312	anti-parallel
Strand 4	B	319	323	anti-parallel
Strand 5	B	328	331	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	81	first strand
Strand 2	C	231	245	anti-parallel
Strand 3	C	119	131	anti-parallel
Strand 4	C	182	184	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	81	first strand
Strand 2	C	231	245	anti-parallel
Strand 3	C	119	131	anti-parallel
Strand 4	C	194	195	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	99	first strand
Strand 2	C	210	215	anti-parallel
Strand 3	C	140	146	anti-parallel
Strand 4	C	173	176	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	264	first strand
Strand 2	C	360	365	anti-parallel
Strand 3	C	287	293	anti-parallel
Strand 4	C	334	337	anti-parallel
Strand 5	C	315	317	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	279	first strand
Strand 2	C	344	350	anti-parallel
Strand 3	C	307	312	anti-parallel
Strand 4	C	319	323	anti-parallel
Strand 5	C	328	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AB6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AB6