Analysis of interatomic Contacts of Structural Units in PDB entry:
6ABH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ABH entry

There are 4 chains in PDB entry 6ABH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 7	LEU 416
B	VAL 7	LEU 421
C	ILE 6	LEU 421
D	ASN 5	ILE 90

There are124 helices in PDB entry 6ABH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	49	68	Right-handed alpha
Helix 3	AA3	A	82	84	Right-handed 310
Helix 4	AA4	A	85	96	Right-handed alpha
Helix 5	AA5	A	107	119	Right-handed alpha
Helix 6	AA6	A	129	139	Right-handed alpha
Helix 7	AA7	A	161	169	Right-handed alpha
Helix 8	AA8	A	174	178	Right-handed 310
Helix 9	AA9	A	209	221	Right-handed alpha
Helix 10	AB1	A	242	251	Right-handed alpha
Helix 11	AB2	A	251	256	Right-handed alpha
Helix 12	AB3	A	267	278	Right-handed alpha
Helix 13	AB4	A	285	294	Right-handed alpha
Helix 14	AB5	A	295	300	Right-handed 310
Helix 15	AB6	A	319	328	Right-handed alpha
Helix 16	AB7	A	405	410	Right-handed alpha
Helix 17	AB8	B	20	33	Right-handed alpha
Helix 18	AB9	B	49	67	Right-handed alpha
Helix 19	AC1	B	85	96	Right-handed alpha
Helix 20	AC2	B	107	119	Right-handed alpha
Helix 21	AC3	B	129	138	Right-handed alpha
Helix 22	AC4	B	160	169	Right-handed alpha
Helix 23	AC5	B	174	178	Right-handed 310
Helix 24	AC6	B	209	221	Right-handed alpha
Helix 25	AC7	B	242	251	Right-handed alpha
Helix 26	AC8	B	251	256	Right-handed alpha
Helix 27	AC9	B	268	278	Right-handed alpha
Helix 28	AD1	B	285	294	Right-handed alpha
Helix 29	AD2	B	297	301	Right-handed 310
Helix 30	AD3	B	319	328	Right-handed alpha
Helix 31	AD4	B	402	410	Right-handed alpha
Helix 32	AD5	C	20	32	Right-handed alpha
Helix 33	AD6	C	33	35	Right-handed 310
Helix 34	AD7	C	49	68	Right-handed alpha
Helix 35	AD8	C	87	96	Right-handed alpha
Helix 36	AD9	C	107	119	Right-handed alpha
Helix 37	AE1	C	129	138	Right-handed alpha
Helix 38	AE2	C	161	169	Right-handed alpha
Helix 39	AE3	C	174	178	Right-handed 310
Helix 40	AE4	C	209	221	Right-handed alpha
Helix 41	AE5	C	242	251	Right-handed alpha
Helix 42	AE6	C	251	256	Right-handed alpha
Helix 43	AE7	C	267	278	Right-handed alpha
Helix 44	AE8	C	285	292	Right-handed alpha
Helix 45	AE9	C	296	301	Right-handed 310
Helix 46	AF1	C	302	306	Right-handed 310
Helix 47	AF2	C	323	328	Right-handed alpha
Helix 48	AF3	C	402	410	Right-handed alpha
Helix 49	AF4	D	20	32	Right-handed alpha
Helix 50	AF5	D	33	35	Right-handed 310
Helix 51	AF6	D	49	68	Right-handed alpha
Helix 52	AF7	D	82	84	Right-handed 310
Helix 53	AF8	D	85	96	Right-handed alpha
Helix 54	AF9	D	107	119	Right-handed alpha
Helix 55	AG1	D	129	139	Right-handed alpha
Helix 56	AG2	D	161	166	Right-handed alpha
Helix 57	AG3	D	174	178	Right-handed 310
Helix 58	AG4	D	209	221	Right-handed alpha
Helix 59	AG5	D	242	251	Right-handed alpha
Helix 60	AG6	D	268	278	Right-handed alpha
Helix 61	AG7	D	285	294	Right-handed alpha
Helix 62	AG8	D	319	328	Right-handed alpha
Helix 63	AG9	D	404	410	Right-handed alpha
Helix 64	AH1	D	411	415	Right-handed 310
Helix 65	AH2	E	20	33	Right-handed alpha
Helix 66	AH3	E	49	68	Right-handed alpha
Helix 67	AH4	E	85	96	Right-handed alpha
Helix 68	AH5	E	107	117	Right-handed alpha
Helix 69	AH6	E	129	139	Right-handed alpha
Helix 70	AH7	E	161	169	Right-handed alpha
Helix 71	AH8	E	174	178	Right-handed 310
Helix 72	AH9	E	209	221	Right-handed alpha
Helix 73	AI1	E	242	251	Right-handed alpha
Helix 74	AI2	E	268	278	Right-handed alpha
Helix 75	AI3	E	285	290	Right-handed alpha
Helix 76	AI4	E	295	301	Right-handed 310
Helix 77	AI5	E	320	327	Right-handed alpha
Helix 78	AI6	E	328	330	Right-handed 310
Helix 79	AI7	E	402	410	Right-handed alpha
Helix 80	AI8	F	20	32	Right-handed alpha
Helix 81	AI9	F	33	35	Right-handed 310
Helix 82	AJ1	F	49	68	Right-handed alpha
Helix 83	AJ2	F	85	96	Right-handed alpha
Helix 84	AJ3	F	107	119	Right-handed alpha
Helix 85	AJ4	F	129	139	Right-handed alpha
Helix 86	AJ5	F	161	169	Right-handed alpha
Helix 87	AJ6	F	174	178	Right-handed 310
Helix 88	AJ7	F	209	221	Right-handed alpha
Helix 89	AJ8	F	242	251	Right-handed alpha
Helix 90	AJ9	F	268	278	Right-handed alpha
Helix 91	AK1	F	285	294	Right-handed alpha
Helix 92	AK2	F	319	328	Right-handed alpha
Helix 93	AK3	F	402	410	Right-handed alpha
Helix 94	AK4	G	20	33	Right-handed alpha
Helix 95	AK5	G	49	68	Right-handed alpha
Helix 96	AK6	G	85	96	Right-handed alpha
Helix 97	AK7	G	107	119	Right-handed alpha
Helix 98	AK8	G	129	138	Right-handed alpha
Helix 99	AK9	G	160	169	Right-handed alpha
Helix 100	AL1	G	174	178	Right-handed 310
Helix 101	AL2	G	209	221	Right-handed alpha
Helix 102	AL3	G	242	251	Right-handed alpha
Helix 103	AL4	G	251	256	Right-handed alpha
Helix 104	AL5	G	270	278	Right-handed alpha
Helix 105	AL6	G	285	292	Right-handed alpha
Helix 106	AL7	G	301	305	Right-handed 310
Helix 107	AL8	G	319	328	Right-handed alpha
Helix 108	AL9	G	339	343	Right-handed 310
Helix 109	AM1	G	402	410	Right-handed alpha
Helix 110	AM2	H	20	33	Right-handed alpha
Helix 111	AM3	H	49	67	Right-handed alpha
Helix 112	AM4	H	85	96	Right-handed alpha
Helix 113	AM5	H	107	119	Right-handed alpha
Helix 114	AM6	H	129	138	Right-handed alpha
Helix 115	AM7	H	161	169	Right-handed alpha
Helix 116	AM8	H	174	178	Right-handed 310
Helix 117	AM9	H	209	221	Right-handed alpha
Helix 118	AN1	H	242	251	Right-handed alpha
Helix 119	AN2	H	251	256	Right-handed alpha
Helix 120	AN3	H	266	278	Right-handed alpha
Helix 121	AN4	H	285	294	Right-handed alpha
Helix 122	AN5	H	296	301	Right-handed 310
Helix 123	AN6	H	319	328	Right-handed alpha
Helix 124	AN7	H	402	410	Right-handed alpha

There are 30 sheets in PDB entry 6ABH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	39	41	anti-parallel
Strand 3	A	258	261	parallel
Strand 4	A	233	236	parallel
Strand 5	A	281	283	parallel
Strand 6	A	308	310	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	75	78	parallel
Strand 3	A	122	125	parallel
Strand 4	A	145	148	parallel
Strand 5	A	159	160	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	195	first strand
Strand 2	A	203	208	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	39	41	anti-parallel
Strand 3	B	258	261	parallel
Strand 4	B	233	236	parallel
Strand 5	B	281	284	parallel
Strand 6	B	308	311	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	75	78	parallel
Strand 3	B	122	125	parallel
Strand 4	B	145	148	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	193	first strand
Strand 2	B	205	208	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	370	first strand
Strand 2	B	389	392	anti-parallel
Strand 3	B	416	417	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	39	41	anti-parallel
Strand 3	C	258	261	parallel
Strand 4	C	233	236	parallel
Strand 5	C	281	283	parallel
Strand 6	C	308	310	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	145	148	parallel
Strand 3	C	122	125	parallel
Strand 4	C	75	78	parallel
Strand 5	C	99	101	parallel
Strand 6	C	189	193	parallel
Strand 7	C	205	208	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	371	first strand
Strand 2	C	388	392	anti-parallel
Strand 3	C	416	417	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	367	372	anti-parallel
Strand 3	D	387	392	anti-parallel
Strand 4	D	416	421	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	39	41	anti-parallel
Strand 3	D	258	261	parallel
Strand 4	D	233	236	parallel
Strand 5	D	281	283	parallel
Strand 6	D	308	310	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	145	148	parallel
Strand 3	D	122	125	parallel
Strand 4	D	75	78	parallel
Strand 5	D	99	101	parallel
Strand 6	D	189	195	parallel
Strand 7	D	203	208	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	39	41	anti-parallel
Strand 3	E	258	261	parallel
Strand 4	E	233	236	parallel
Strand 5	E	281	283	parallel
Strand 6	E	308	310	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	75	78	parallel
Strand 3	E	122	125	parallel
Strand 4	E	145	148	parallel
Strand 5	E	159	160	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	193	first strand
Strand 2	E	205	208	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	367	368	first strand
Strand 2	E	389	392	anti-parallel
Strand 3	E	416	417	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	367	369	anti-parallel
Strand 3	F	390	392	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	48	first strand
Strand 2	F	39	41	anti-parallel
Strand 3	F	258	261	parallel
Strand 4	F	233	236	parallel
Strand 5	F	281	284	parallel
Strand 6	F	308	311	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	75	78	parallel
Strand 3	F	122	125	parallel
Strand 4	F	145	148	parallel
Strand 5	F	159	160	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	195	first strand
Strand 2	F	203	208	anti-parallel
Strand 3	F	398	399	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	348	first strand
Strand 2	F	362	363	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	48	first strand
Strand 2	G	39	41	anti-parallel
Strand 3	G	258	261	parallel
Strand 4	G	233	236	parallel
Strand 5	G	281	284	parallel
Strand 6	G	308	311	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	101	first strand
Strand 2	G	75	78	parallel
Strand 3	G	122	125	parallel
Strand 4	G	145	148	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	195	first strand
Strand 2	G	203	208	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	367	368	first strand
Strand 2	G	391	392	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	48	first strand
Strand 2	H	39	41	anti-parallel
Strand 3	H	258	261	parallel
Strand 4	H	233	236	parallel
Strand 5	H	281	284	parallel
Strand 6	H	308	311	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	101	first strand
Strand 2	H	75	78	parallel
Strand 3	H	122	125	parallel
Strand 4	H	145	148	parallel
Strand 5	H	159	160	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	189	194	first strand
Strand 2	H	204	208	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	348	first strand
Strand 2	H	362	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ABH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ABH