Analysis of interatomic Contacts of Structural Units in PDB entry:
6ABJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ABJ entry

There are 2 chains in PDB entry 6ABJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 327
B
 MET 1ALA 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6ABJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
21 23Right-handed 310
Helix 3
AA3
A
38 43Right-handed 310
Helix 4
AA4
A
57 67Right-handed alpha
Helix 5
AA5
A
83 90Right-handed alpha
Helix 6
AA6
A
101 119Right-handed alpha
Helix 7
AA7
A
119 129Right-handed alpha
Helix 8
AA8
A
153 166Right-handed alpha
Helix 9
AA9
A
178 184Right-handed alpha
Helix 10
AB1
A
190 198Right-handed alpha
Helix 11
AB2
A
216 223Right-handed alpha
Helix 12
AB3
A
234 238Right-handed 310
Helix 13
AB4
A
239 250Right-handed alpha
Helix 14
AB5
A
262 266Right-handed 310
Helix 15
AB6
A
278 286Right-handed alpha
Helix 16
AB7
A
300 320Right-handed alpha
Helix 17
AB8
B
9 20Right-handed alpha
Helix 18
AB9
B
21 23Right-handed 310
Helix 19
AC1
B
38 43Right-handed 310
Helix 20
AC2
B
57 67Right-handed alpha
Helix 21
AC3
B
83 90Right-handed alpha
Helix 22
AC4
B
101 119Right-handed alpha
Helix 23
AC5
B
119 128Right-handed alpha
Helix 24
AC6
B
153 166Right-handed alpha
Helix 25
AC7
B
178 184Right-handed alpha
Helix 26
AC8
B
190 198Right-handed alpha
Helix 27
AC9
B
216 223Right-handed alpha
Helix 28
AD1
B
234 238Right-handed 310
Helix 29
AD2
B
239 250Right-handed alpha
Helix 30
AD3
B
262 266Right-handed 310
Helix 31
AD4
B
278 287Right-handed alpha
Helix 32
AD5
B
300 320Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6ABJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
2 5parallel
Strand 3
A
47 50parallel
Strand 4
A
71 74parallel
Strand 5
A
94 95parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
169 173parallel
Strand 3
A
146 150parallel
Strand 4
A
200 203parallel
Strand 5
A
228 231parallel
Strand 6
A
254 257parallel
Strand 7
A
290 292parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
2 5parallel
Strand 3
B
47 50parallel
Strand 4
B
71 74parallel
Strand 5
B
94 95parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
169 173parallel
Strand 3
B
146 150parallel
Strand 4
B
200 203parallel
Strand 5
B
228 231parallel
Strand 6
B
254 257parallel
Strand 7
B
290 292parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il