Analysis of interatomic Contacts of Structural Units in PDB entry:
6ABW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ABW entry

There is 1 chain in PDB entry 6ABW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ARG 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6ABW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 42Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
58 73Right-handed alpha
Helix 4
AA4
A
76 86Right-handed alpha
Helix 5
AA5
A
91 108Right-handed alpha
Helix 6
AA6
A
115 140Right-handed alpha
Helix 7
AA7
A
151 162Right-handed alpha
Helix 8
AA8
A
166 180Right-handed alpha
Helix 9
AA9
A
186 197Right-handed alpha
Helix 10
AB1
A
201 214Right-handed alpha
Helix 11
AB2
A
220 233Right-handed alpha
Helix 12
AB3
A
234 236Right-handed 310
Helix 13
AB4
A
237 246Right-handed alpha
Helix 14
AB5
A
265 281Right-handed alpha
Helix 15
AB6
A
282 304Right-handed alpha
Helix 16
AB7
A
305 307Right-handed 310
Helix 17
AB8
A
312 324Right-handed alpha
Helix 18
AB9
A
326 328Right-handed 310
Helix 19
AC1
A
329 354Right-handed alpha
Helix 20
AC2
A
373 377Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 6ABW.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
27 30anti-parallel
Strand 3
A
33 34anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il