Analysis of interatomic Contacts of Structural Units in PDB entry:
6ACD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ACD entry

There are 3 chains in PDB entry 6ACD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 18	VAL 1119
B	ARG 18	VAL 1119
C	ARG 18	VAL 1119

There are 45 helices in PDB entry 6ACD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	281	291	Right-handed alpha
Helix 2	AA2	A	324	329	Right-handed alpha
Helix 3	AA3	A	371	377	Right-handed 310
Helix 4	AA4	A	404	409	Right-handed alpha
Helix 5	AA5	A	488	492	Right-handed 310
Helix 6	AA6	A	604	612	Right-handed alpha
Helix 7	AA7	A	730	737	Right-handed alpha
Helix 8	AA8	A	740	765	Right-handed alpha
Helix 9	AA9	A	798	808	Right-handed alpha
Helix 10	AB1	A	848	865	Right-handed alpha
Helix 11	AB2	A	880	888	Right-handed alpha
Helix 12	AB3	A	895	900	Right-handed alpha
Helix 13	AB4	A	901	922	Right-handed alpha
Helix 14	AB5	A	927	950	Right-handed alpha
Helix 15	AB6	A	969	1017	Right-handed alpha
Helix 16	AB7	B	281	291	Right-handed alpha
Helix 17	AB8	B	324	330	Right-handed alpha
Helix 18	AB9	B	373	377	Right-handed 310
Helix 19	AC1	B	404	409	Right-handed alpha
Helix 20	AC2	B	488	492	Right-handed 310
Helix 21	AC3	B	604	611	Right-handed alpha
Helix 22	AC4	B	730	737	Right-handed alpha
Helix 23	AC5	B	740	765	Right-handed alpha
Helix 24	AC6	B	798	808	Right-handed alpha
Helix 25	AC7	B	848	865	Right-handed alpha
Helix 26	AC8	B	880	887	Right-handed alpha
Helix 27	AC9	B	895	900	Right-handed alpha
Helix 28	AD1	B	901	922	Right-handed alpha
Helix 29	AD2	B	927	950	Right-handed alpha
Helix 30	AD3	B	968	1014	Right-handed alpha
Helix 31	AD4	C	281	291	Right-handed alpha
Helix 32	AD5	C	325	330	Right-handed alpha
Helix 33	AD6	C	371	375	Right-handed 310
Helix 34	AD7	C	390	397	Right-handed 310
Helix 35	AD8	C	404	409	Right-handed alpha
Helix 36	AD9	C	603	612	Right-handed alpha
Helix 37	AE1	C	730	737	Right-handed alpha
Helix 38	AE2	C	740	764	Right-handed alpha
Helix 39	AE3	C	798	808	Right-handed alpha
Helix 40	AE4	C	848	865	Right-handed alpha
Helix 41	AE5	C	880	888	Right-handed alpha
Helix 42	AE6	C	895	900	Right-handed alpha
Helix 43	AE7	C	901	922	Right-handed alpha
Helix 44	AE8	C	927	950	Right-handed alpha
Helix 45	AE9	C	969	1014	Right-handed alpha

There are 44 sheets in PDB entry 6ACD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	65	69	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	87	93	anti-parallel
Strand 5	A	181	190	anti-parallel
Strand 6	A	193	200	anti-parallel
Strand 7	A	217	222	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	59	first strand
Strand 2	A	258	266	anti-parallel
Strand 3	A	272	277	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	230	233	anti-parallel
Strand 3	A	101	104	anti-parallel
Strand 4	A	112	118	anti-parallel
Strand 5	A	123	129	anti-parallel
Strand 6	A	157	164	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	236	239	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	306	first strand
Strand 2	A	578	585	anti-parallel
Strand 3	A	595	597	anti-parallel
Strand 4	A	636	637	anti-parallel
Strand 5	A	627	628	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	314	first strand
Strand 2	A	525	528	parallel
Strand 3	A	533	540	anti-parallel
Strand 4	A	568	573	anti-parallel
Strand 5	A	561	564	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	345	first strand
Strand 2	A	382	389	anti-parallel
Strand 3	A	494	500	anti-parallel
Strand 4	A	419	424	anti-parallel
Strand 5	A	363	366	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	510	511	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	441	first strand
Strand 2	A	478	480	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	642	first strand
Strand 2	A	675	677	parallel
Strand 3	A	657	658	anti-parallel
Strand 4	A	650	651	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	684	first strand
Strand 2	C	769	770	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	701	first strand
Strand 2	A	1050	1051	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	710	first strand
Strand 2	A	1041	1047	anti-parallel
Strand 3	A	1032	1037	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	718	first strand
Strand 2	A	840	842	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	770	first strand
Strand 2	B	683	684	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	779	first strand
Strand 2	A	782	783	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1069	1071	first strand
Strand 2	A	1103	1105	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1078	1079	first strand
Strand 2	A	1085	1086	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	65	69	anti-parallel
Strand 3	B	251	256	anti-parallel
Strand 4	B	87	93	anti-parallel
Strand 5	B	181	190	anti-parallel
Strand 6	B	193	199	anti-parallel
Strand 7	B	217	222	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	59	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	272	277	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	230	233	anti-parallel
Strand 3	B	101	104	anti-parallel
Strand 4	B	112	118	anti-parallel
Strand 5	B	123	129	anti-parallel
Strand 6	B	157	164	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	237	239	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	306	first strand
Strand 2	B	578	584	anti-parallel
Strand 3	B	595	597	anti-parallel
Strand 4	B	636	637	anti-parallel
Strand 5	B	627	628	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	345	first strand
Strand 2	B	382	389	anti-parallel
Strand 3	B	494	500	anti-parallel
Strand 4	B	419	424	anti-parallel
Strand 5	B	363	366	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	478	479	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	528	first strand
Strand 2	B	533	540	anti-parallel
Strand 3	B	568	573	anti-parallel
Strand 4	B	561	564	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	651	first strand
Strand 2	B	657	658	anti-parallel
Strand 3	B	676	677	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	701	first strand
Strand 2	B	1050	1051	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	704	710	first strand
Strand 2	B	1041	1047	anti-parallel
Strand 3	B	1032	1037	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	718	first strand
Strand 2	B	840	842	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1078	1079	first strand
Strand 2	B	1085	1086	anti-parallel
Strand 3	B	1095	1096	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	65	71	anti-parallel
Strand 3	C	250	256	anti-parallel
Strand 4	C	87	93	anti-parallel
Strand 5	C	181	190	anti-parallel
Strand 6	C	193	200	anti-parallel
Strand 7	C	217	222	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	59	first strand
Strand 2	C	258	266	anti-parallel
Strand 3	C	272	277	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	230	233	anti-parallel
Strand 3	C	101	104	anti-parallel
Strand 4	C	112	118	anti-parallel
Strand 5	C	123	129	anti-parallel
Strand 6	C	157	164	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	237	239	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	306	first strand
Strand 2	C	578	584	anti-parallel
Strand 3	C	595	597	anti-parallel
Strand 4	C	636	637	anti-parallel
Strand 5	C	627	628	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	314	first strand
Strand 2	C	525	528	parallel
Strand 3	C	533	540	anti-parallel
Strand 4	C	568	573	anti-parallel
Strand 5	C	560	564	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	345	first strand
Strand 2	C	382	389	anti-parallel
Strand 3	C	494	500	anti-parallel
Strand 4	C	419	424	anti-parallel
Strand 5	C	363	366	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	441	first strand
Strand 2	C	478	480	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	652	first strand
Strand 2	C	656	658	anti-parallel
Strand 3	C	676	677	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	704	710	first strand
Strand 2	C	1041	1047	anti-parallel
Strand 3	C	1032	1038	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	718	first strand
Strand 2	C	840	842	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1069	1071	first strand
Strand 2	C	1103	1105	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1078	1079	first strand
Strand 2	C	1085	1086	anti-parallel
Strand 3	C	1095	1096	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ACD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ACD