Analysis of interatomic Contacts of Structural Units in PDB entry:
6AD0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AD0 entry

There are 6 chains in PDB entry 6AD0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	ILE 111
H	VAL 2	PRO 115
A	ASP 2	ASN 297
B	SER 10	SER 254
C	GLY 1	GLN 240
D	ASN 29	ASN 69

There are 15 helices in PDB entry 6AD0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	30	Right-handed 310
Helix 2	AA2	A	4	8	Right-handed 310
Helix 3	AA3	A	49	53	Right-handed 310
Helix 4	AA4	A	79	85	Right-handed alpha
Helix 5	AA5	A	115	123	Right-handed alpha
Helix 6	AA6	A	224	228	Right-handed 310
Helix 7	AA7	B	91	95	Right-handed 310
Helix 8	AA8	B	148	153	Right-handed alpha
Helix 9	AA9	B	172	176	Right-handed 310
Helix 10	AB1	C	63	66	Right-handed 310
Helix 11	AB2	C	92	96	Right-handed 310
Helix 12	AB3	C	97	103	Right-handed alpha
Helix 13	AB4	C	143	148	Right-handed alpha
Helix 14	AB5	C	182	188	Right-handed 310
Helix 15	AB6	D	49	53	Right-handed 310

There are 21 sheets in PDB entry 6AD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	22	24	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	10	first strand
Strand 2	L	108	109	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	50	51	first strand
Strand 2	L	39	42	anti-parallel
Strand 3	L	92	94	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	68	72	first strand
Strand 2	L	75	79	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	24	25	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	93	96	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	99	100	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	D	47	48	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	96	first strand
Strand 2	A	245	252	anti-parallel
Strand 3	A	134	140	anti-parallel
Strand 4	A	187	188	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	149	153	anti-parallel
Strand 4	A	177	181	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	125	131	anti-parallel
Strand 3	A	255	262	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	21	25	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	191	196	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	242	249	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	238	239	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	233	235	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	213	217	anti-parallel
Strand 3	B	119	128	anti-parallel
Strand 4	B	181	185	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	213	217	anti-parallel
Strand 3	B	119	128	anti-parallel
Strand 4	B	221	224	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	209	216	anti-parallel
Strand 3	C	68	72	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	209	216	anti-parallel
Strand 3	C	115	119	anti-parallel
Strand 4	C	162	165	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	194	201	anti-parallel
Strand 3	C	126	133	anti-parallel
Strand 4	C	151	156	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	109	first strand
Strand 2	C	224	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AD0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AD0