Analysis of interatomic Contacts of Structural Units in PDB entry:
6AD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AD1 entry

There are 3 chains in PDB entry 6AD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 76ALA 296
B
 ASN 30ARG 250
C
 ILE 2GLN 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6AD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 85Right-handed alpha
Helix 2
AA2
A
118 123Right-handed alpha
Helix 3
AA3
A
167 171Right-handed 310
Helix 4
AA4
B
57 61Right-handed 310
Helix 5
AA5
B
89 97Right-handed alpha
Helix 6
AA6
B
172 176Right-handed 310
Helix 7
AA7
C
42 46Right-handed 310
Helix 8
AA8
C
62 66Right-handed 310
Helix 9
AA9
C
92 96Right-handed 310
Helix 10
AB1
C
144 149Right-handed alpha
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There are 9 sheets in PDB entry 6AD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
248 259anti-parallel
Strand 3
A
128 138anti-parallel
Strand 4
A
187 191anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
234 235anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
178 180anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
193 196parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
233 239anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
193 196parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
233 239anti-parallel
Strand 5
B
69 71anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
78 79anti-parallel
Strand 3
B
213 217anti-parallel
Strand 4
B
124 128anti-parallel
Strand 5
B
181 182anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 72first strand
Strand 2
C
209 214anti-parallel
Strand 3
C
114 119anti-parallel
Strand 4
C
164 166anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 195anti-parallel
Strand 3
C
128 133anti-parallel
Strand 4
C
153 156anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 110first strand
Strand 2
C
223 224anti-parallel
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