Analysis of interatomic Contacts of Structural Units in PDB entry:
6ADD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ADD entry

There are 2 chains in PDB entry 6ADD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7LEU 174
B
 PRO 10LEU 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6ADD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 18Right-handed 310
Helix 2
AA2
A
19 31Right-handed alpha
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
85 88Right-handed 310
Helix 5
AA5
A
91 107Right-handed alpha
Helix 6
AA6
A
118 124Right-handed alpha
Helix 7
AA7
A
136 144Right-handed alpha
Helix 8
AA8
A
148 156Right-handed alpha
Helix 9
AA9
A
157 159Right-handed 310
Helix 10
AB1
A
160 165Right-handed alpha
Helix 11
AB2
B
16 18Right-handed 310
Helix 12
AB3
B
19 31Right-handed alpha
Helix 13
AB4
B
39 46Right-handed alpha
Helix 14
AB5
B
85 88Right-handed 310
Helix 15
AB6
B
91 107Right-handed alpha
Helix 16
AB7
B
118 124Right-handed alpha
Helix 17
AB8
B
136 144Right-handed alpha
Helix 18
AB9
B
148 156Right-handed alpha
Helix 19
AC1
B
157 159Right-handed 310
Helix 20
AC2
B
160 165Right-handed alpha
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There are 2 sheets in PDB entry 6ADD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
62 72anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
111 116parallel
Strand 6
A
168 173anti-parallel
Strand 7
A
128 130anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
62 72anti-parallel
Strand 4
B
75 83anti-parallel
Strand 5
B
111 116parallel
Strand 6
B
168 173anti-parallel
Strand 7
B
128 129anti-parallel
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