Analysis of interatomic Contacts of Structural Units in PDB entry:
6ADE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ADE entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 6ADE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASP 50
A
 THR 52ALA 150
A
 CYS 152GLU 335
B
 LYS 3ASP 50
B
 THR 52ALA 150
B
 CYS 152GLU 335
C
 LYS 3ASP 50
C
 THR 52ALA 150
C
 CYS 152GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6ADE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
39 49Right-handed alpha
Helix 3
AA3
A
81 85Right-handed 310
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
109 114Right-handed alpha
Helix 7
AA7
A
136 140Right-handed 310
Helix 8
AA8
A
151 168Right-handed alpha
Helix 9
AA9
A
196 200Right-handed 310
Helix 10
AB1
A
212 221Right-handed alpha
Helix 11
AB2
A
222 225Right-handed 310
Helix 12
AB3
A
254 268Right-handed alpha
Helix 13
AB4
A
282 287Right-handed 310
Helix 14
AB5
A
317 334Right-handed alpha
Helix 15
AB6
B
12 26Right-handed alpha
Helix 16
AB7
B
39 49Right-handed alpha
Helix 17
AB8
B
81 85Right-handed 310
Helix 18
AB9
B
86 91Right-handed alpha
Helix 19
AC1
B
104 109Right-handed alpha
Helix 20
AC2
B
109 114Right-handed alpha
Helix 21
AC3
B
136 140Right-handed 310
Helix 22
AC4
B
151 168Right-handed alpha
Helix 23
AC5
B
196 200Right-handed 310
Helix 24
AC6
B
213 221Right-handed alpha
Helix 25
AC7
B
222 225Right-handed 310
Helix 26
AC8
B
254 268Right-handed alpha
Helix 27
AC9
B
282 287Right-handed 310
Helix 28
AD1
B
317 334Right-handed alpha
Helix 29
AD2
C
12 26Right-handed alpha
Helix 30
AD3
C
39 49Right-handed alpha
Helix 31
AD4
C
81 85Right-handed 310
Helix 32
AD5
C
86 91Right-handed alpha
Helix 33
AD6
C
104 109Right-handed alpha
Helix 34
AD7
C
109 114Right-handed alpha
Helix 35
AD8
C
136 140Right-handed 310
Helix 36
AD9
C
151 168Right-handed alpha
Helix 37
AE1
C
212 221Right-handed alpha
Helix 38
AE2
C
222 225Right-handed 310
Helix 39
AE3
C
254 268Right-handed alpha
Helix 40
AE4
C
282 287Right-handed 310
Helix 41
AE5
C
317 334Right-handed alpha
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There are 6 sheets in PDB entry 6ADE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
29 34parallel
Strand 5
A
5 9parallel
Strand 6
A
94 97parallel
Strand 7
A
118 121parallel
Strand 8
A
146 148parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
228 234anti-parallel
Strand 3
A
170 179parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
307 314anti-parallel
Strand 6
A
293 304anti-parallel
Strand 7
A
274 277parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
66 69anti-parallel
Strand 3
B
72 77anti-parallel
Strand 4
B
29 34parallel
Strand 5
B
5 9parallel
Strand 6
B
94 97parallel
Strand 7
B
118 121parallel
Strand 8
B
146 148parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
228 234anti-parallel
Strand 3
B
170 179parallel
Strand 4
B
241 249anti-parallel
Strand 5
B
307 314anti-parallel
Strand 6
B
293 304anti-parallel
Strand 7
B
274 277parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
66 69anti-parallel
Strand 3
C
72 77anti-parallel
Strand 4
C
29 34parallel
Strand 5
C
5 9parallel
Strand 6
C
94 97parallel
Strand 7
C
118 121parallel
Strand 8
C
146 148parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 209first strand
Strand 2
C
228 234anti-parallel
Strand 3
C
170 179parallel
Strand 4
C
241 249anti-parallel
Strand 5
C
307 314anti-parallel
Strand 6
C
293 304anti-parallel
Strand 7
C
274 277parallel
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