Analysis of interatomic Contacts of Structural Units in PDB entry:
6ADL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ADL entry

There are 4 chains in PDB entry 6ADL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 29	LYS 258
C	GLY 1	PHE 238
B	VAL 32	THR 277
R	SER 36	CYS 220

There are 19 helices in PDB entry 6ADL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	37	Right-handed alpha
Helix 2	AA2	A	107	112	Right-handed alpha
Helix 3	AA3	A	224	228	Right-handed 310
Helix 4	AA4	C	44	49	Right-handed alpha
Helix 5	AA5	C	100	105	Right-handed alpha
Helix 6	AA6	C	106	108	Right-handed 310
Helix 7	AA7	C	145	151	Right-handed alpha
Helix 8	AA8	B	86	92	Right-handed alpha
Helix 9	AA9	B	101	106	Right-handed alpha
Helix 10	AB1	B	153	158	Right-handed alpha
Helix 11	AB2	B	164	170	Right-handed alpha
Helix 12	AB3	B	195	202	Right-handed 310
Helix 13	AB4	R	58	71	Right-handed alpha
Helix 14	AB5	R	98	110	Right-handed alpha
Helix 15	AB6	R	119	135	Right-handed alpha
Helix 16	AB7	R	154	171	Right-handed alpha
Helix 17	AB8	R	184	192	Right-handed alpha
Helix 18	AB9	R	194	198	Right-handed 310
Helix 19	AC1	R	201	217	Right-handed alpha

There are 15 sheets in PDB entry 6ADL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	216	220	anti-parallel
Strand 3	A	41	49	parallel
Strand 4	A	234	249	anti-parallel
Strand 5	A	116	129	anti-parallel
Strand 6	A	191	192	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	216	220	anti-parallel
Strand 4	A	72	74	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	116	129	anti-parallel
Strand 3	A	234	249	anti-parallel
Strand 4	C	40	41	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	84	85	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	B	186	189	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	157	160	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	213	220	anti-parallel
Strand 3	C	72	74	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	213	220	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	166	168	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	110	112	anti-parallel
Strand 3	C	225	227	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	158	first strand
Strand 2	C	130	133	anti-parallel
Strand 3	C	196	198	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	217	218	parallel
Strand 3	B	116	117	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	258	262	anti-parallel
Strand 3	B	120	121	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	236	248	anti-parallel
Strand 3	B	127	135	anti-parallel
Strand 4	B	204	208	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	270	272	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	90	96	first strand
Strand 2	R	78	85	anti-parallel
Strand 3	R	43	50	parallel
Strand 4	R	143	148	parallel
Strand 5	R	173	179	parallel
Strand 6	R	199	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ADL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ADL