Analysis of interatomic Contacts of Structural Units in PDB entry:
6ADM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ADM entry

There are 5 chains in PDB entry 6ADM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LYS 258
C	PRO 2	PHE 238
B	ASP 12	ALA 278
D	ARG 14	LYS 72
R	SER 36	CYS 220

There are 23 helices in PDB entry 6ADM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	14	19	Right-handed alpha
Helix 3	AA3	A	32	37	Right-handed alpha
Helix 4	AA4	A	107	112	Right-handed alpha
Helix 5	AA5	A	162	164	Right-handed 310
Helix 6	AA6	A	224	228	Right-handed 310
Helix 7	AA7	C	43	47	Right-handed 310
Helix 8	AA8	C	99	106	Right-handed alpha
Helix 9	AA9	C	145	150	Right-handed alpha
Helix 10	AB1	B	86	92	Right-handed alpha
Helix 11	AB2	B	93	96	Right-handed 310
Helix 12	AB3	B	101	106	Right-handed alpha
Helix 13	AB4	B	151	159	Right-handed alpha
Helix 14	AB5	B	164	169	Right-handed alpha
Helix 15	AB6	B	195	202	Right-handed 310
Helix 16	AB7	D	26	31	Right-handed alpha
Helix 17	AB8	R	52	56	Right-handed 310
Helix 18	AB9	R	58	72	Right-handed alpha
Helix 19	AC1	R	98	110	Right-handed alpha
Helix 20	AC2	R	120	135	Right-handed alpha
Helix 21	AC3	R	154	167	Right-handed alpha
Helix 22	AC4	R	185	190	Right-handed alpha
Helix 23	AC5	R	203	219	Right-handed alpha

There are 17 sheets in PDB entry 6ADM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	213	220	anti-parallel
Strand 5	C	52	53	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	213	220	anti-parallel
Strand 5	C	72	74	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	234	240	anti-parallel
Strand 3	A	123	129	anti-parallel
Strand 4	A	178	182	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	216	220	anti-parallel
Strand 3	A	137	141	anti-parallel
Strand 4	A	170	171	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	80	81	anti-parallel
Strand 3	A	104	105	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	B	186	189	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	C	40	41	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	158	160	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	205	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	193	203	anti-parallel
Strand 3	C	135	136	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	193	203	anti-parallel
Strand 3	C	128	133	anti-parallel
Strand 4	C	155	158	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	108	112	anti-parallel
Strand 3	C	225	229	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	24	26	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	258	272	anti-parallel
Strand 3	B	108	120	anti-parallel
Strand 4	B	228	229	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	258	272	anti-parallel
Strand 3	B	108	120	anti-parallel
Strand 4	B	214	218	anti-parallel
Strand 5	B	32	35	parallel
Strand 6	D	69	72	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	236	247	anti-parallel
Strand 3	B	128	135	anti-parallel
Strand 4	B	204	208	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	89	96	first strand
Strand 2	R	78	85	anti-parallel
Strand 3	R	42	50	parallel
Strand 4	R	141	149	parallel
Strand 5	R	174	179	parallel
Strand 6	R	198	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ADM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ADM