Analysis of interatomic Contacts of Structural Units in PDB entry:
6ADR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ADR entry

There are 5 chains in PDB entry 6ADR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LYS 258
C	GLY 1	PHE 238
B	ASP 12	THR 278
D	ARG 14	LYS 72
R	SER 36	CYS 220

There are 19 helices in PDB entry 6ADR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	37	Right-handed alpha
Helix 2	AA2	A	107	112	Right-handed alpha
Helix 3	AA3	A	224	228	Right-handed 310
Helix 4	AA4	C	44	49	Right-handed alpha
Helix 5	AA5	C	99	105	Right-handed alpha
Helix 6	AA6	C	145	150	Right-handed alpha
Helix 7	AA7	B	86	92	Right-handed alpha
Helix 8	AA8	B	101	106	Right-handed alpha
Helix 9	AA9	B	164	169	Right-handed alpha
Helix 10	AB1	B	195	202	Right-handed 310
Helix 11	AB2	D	26	31	Right-handed alpha
Helix 12	AB3	R	58	71	Right-handed alpha
Helix 13	AB4	R	98	110	Right-handed alpha
Helix 14	AB5	R	119	135	Right-handed alpha
Helix 15	AB6	R	154	171	Right-handed alpha
Helix 16	AB7	R	185	190	Right-handed alpha
Helix 17	AB8	R	194	196	Right-handed 310
Helix 18	AB9	R	201	208	Right-handed alpha
Helix 19	AC1	R	212	219	Right-handed alpha

There are 16 sheets in PDB entry 6ADR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	C	164	168	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	213	220	anti-parallel
Strand 5	C	52	53	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	C	164	168	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	213	220	anti-parallel
Strand 5	C	72	74	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	216	220	anti-parallel
Strand 3	A	41	49	parallel
Strand 4	A	234	249	anti-parallel
Strand 5	A	116	129	anti-parallel
Strand 6	A	191	192	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	182	first strand
Strand 2	A	116	129	anti-parallel
Strand 3	A	234	249	anti-parallel
Strand 4	C	40	41	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	216	220	anti-parallel
Strand 4	A	72	74	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	80	81	anti-parallel
Strand 3	A	104	105	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	B	187	189	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	B	182	183	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	157	160	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	193	203	anti-parallel
Strand 3	C	128	136	anti-parallel
Strand 4	C	156	158	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	108	112	anti-parallel
Strand 3	C	225	229	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	22	24	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	258	262	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	214	218	anti-parallel
Strand 5	B	33	35	parallel
Strand 6	D	69	71	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	236	247	anti-parallel
Strand 3	B	128	135	anti-parallel
Strand 4	B	204	208	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	108	111	anti-parallel
Strand 3	B	269	272	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	89	96	first strand
Strand 2	R	78	85	anti-parallel
Strand 3	R	43	50	parallel
Strand 4	R	143	149	parallel
Strand 5	R	173	179	parallel
Strand 6	R	198	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ADR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ADR