Analysis of interatomic Contacts of Structural Units in PDB entry:
6AE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AE2 entry

There are 2 chains in PDB entry 6AE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5GLU 216
B
 LYS 5GLU 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6AE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 50Right-handed 310
Helix 2
AA2
A
59 74Right-handed alpha
Helix 3
AA3
A
83 90Right-handed alpha
Helix 4
AA4
A
119 124Right-handed alpha
Helix 5
AA5
A
169 186Right-handed alpha
Helix 6
AA6
B
59 75Right-handed alpha
Helix 7
AA7
B
83 90Right-handed alpha
Helix 8
AA8
B
114 118Right-handed 310
Helix 9
AA9
B
119 126Right-handed alpha
Helix 10
AB1
B
169 186Right-handed alpha
Helix 11
AB2
B
211 216Right-handed alpha
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There are 6 sheets in PDB entry 6AE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
110 112anti-parallel
Strand 4
A
155 165anti-parallel
Strand 5
A
6 18anti-parallel
Strand 6
A
200 203anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
155 165anti-parallel
Strand 3
A
6 18anti-parallel
Strand 4
A
208 210anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
146 150anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
51 58anti-parallel
Strand 3
B
110 112anti-parallel
Strand 4
B
155 165anti-parallel
Strand 5
B
6 18anti-parallel
Strand 6
B
200 204anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
155 165anti-parallel
Strand 3
B
6 18anti-parallel
Strand 4
B
208 210anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 130first strand
Strand 2
B
147 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il