Analysis of interatomic Contacts of Structural Units in PDB entry:
6AE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AE6 entry

There are 2 chains in PDB entry 6AE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 13GLN 670
B
 ASN 13GLN 670
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 6AE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
38 44Right-handed alpha
Helix 3
AA3
A
67 84Right-handed alpha
Helix 4
AA4
A
94 104Right-handed 310
Helix 5
AA5
A
136 145Right-handed alpha
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
161 173Right-handed alpha
Helix 8
AA8
A
183 194Right-handed alpha
Helix 9
AA9
A
195 196Right-handed 310
Helix 10
AB1
A
197 201Right-handed 310
Helix 11
AB2
A
208 215Right-handed alpha
Helix 12
AB3
A
229 250Right-handed alpha
Helix 13
AB4
A
277 282Right-handed alpha
Helix 14
AB5
A
291 307Right-handed alpha
Helix 15
AB6
A
321 334Right-handed alpha
Helix 16
AB7
A
348 353Right-handed 310
Helix 17
AB8
A
354 369Right-handed alpha
Helix 18
AB9
A
370 372Right-handed 310
Helix 19
AC1
A
373 385Right-handed alpha
Helix 20
AC2
A
409 431Right-handed alpha
Helix 21
AC3
A
433 435Right-handed 310
Helix 22
AC4
A
436 440Right-handed alpha
Helix 23
AC5
A
456 473Right-handed alpha
Helix 24
AC6
A
480 484Right-handed 310
Helix 25
AC7
A
490 494Right-handed 310
Helix 26
AC8
A
518 527Right-handed alpha
Helix 27
AC9
A
539 554Right-handed alpha
Helix 28
AD1
A
556 568Right-handed alpha
Helix 29
AD2
A
586 596Right-handed alpha
Helix 30
AD3
A
598 600Right-handed 310
Helix 31
AD4
A
606 621Right-handed alpha
Helix 32
AD5
A
626 640Right-handed alpha
Helix 33
AD6
A
645 649Right-handed 310
Helix 34
AD7
A
650 658Right-handed alpha
Helix 35
AD8
B
14 23Right-handed alpha
Helix 36
AD9
B
38 45Right-handed alpha
Helix 37
AE1
B
67 84Right-handed alpha
Helix 38
AE2
B
94 104Right-handed 310
Helix 39
AE3
B
136 145Right-handed alpha
Helix 40
AE4
B
149 153Right-handed 310
Helix 41
AE5
B
161 173Right-handed alpha
Helix 42
AE6
B
183 194Right-handed alpha
Helix 43
AE7
B
195 196Right-handed 310
Helix 44
AE8
B
197 201Right-handed 310
Helix 45
AE9
B
208 215Right-handed alpha
Helix 46
AF1
B
229 237Right-handed alpha
Helix 47
AF2
B
237 250Right-handed alpha
Helix 48
AF3
B
277 282Right-handed alpha
Helix 49
AF4
B
291 307Right-handed alpha
Helix 50
AF5
B
324 334Right-handed alpha
Helix 51
AF6
B
348 353Right-handed 310
Helix 52
AF7
B
354 369Right-handed alpha
Helix 53
AF8
B
370 372Right-handed 310
Helix 54
AF9
B
373 385Right-handed alpha
Helix 55
AG1
B
409 431Right-handed alpha
Helix 56
AG2
B
433 435Right-handed 310
Helix 57
AG3
B
436 440Right-handed alpha
Helix 58
AG4
B
456 473Right-handed alpha
Helix 59
AG5
B
480 484Right-handed 310
Helix 60
AG6
B
490 494Right-handed 310
Helix 61
AG7
B
518 527Right-handed alpha
Helix 62
AG8
B
539 554Right-handed alpha
Helix 63
AG9
B
556 568Right-handed alpha
Helix 64
AH1
B
586 596Right-handed alpha
Helix 65
AH2
B
598 600Right-handed 310
Helix 66
AH3
B
606 621Right-handed alpha
Helix 67
AH4
B
626 640Right-handed alpha
Helix 68
AH5
B
645 649Right-handed 310
Helix 69
AH6
B
650 658Right-handed alpha
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There are 12 sheets in PDB entry 6AE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
48 55anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
395 400anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
258 262parallel
Strand 5
A
286 290anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
528 530anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 446first strand
Strand 2
A
449 455anti-parallel
Strand 3
A
339 344anti-parallel
Strand 4
A
487 488anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 516first strand
Strand 2
A
500 506anti-parallel
Strand 3
A
602 605anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
666 669anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
48 49anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
395 400anti-parallel
Strand 3
B
386 391anti-parallel
Strand 4
B
258 262parallel
Strand 5
B
286 290anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
528 530anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 446first strand
Strand 2
B
449 455anti-parallel
Strand 3
B
339 344anti-parallel
Strand 4
B
487 488anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 516first strand
Strand 2
B
500 506anti-parallel
Strand 3
B
602 605anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 585first strand
Strand 2
B
666 669anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il