Analysis of interatomic Contacts of Structural Units in PDB entry:
6AE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AE9 entry

There are 6 chains in PDB entry 6AE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 43THR 167
A
 PRO 169ASP 175
A
 PRO 177LEU 295
B
 GLY 43THR 167
B
 PRO 169ASP 175
B
 PRO 177LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6AE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 60Right-handed 310
Helix 2
AA2
A
83 88Right-handed 310
Helix 3
AA3
A
92 106Right-handed alpha
Helix 4
AA4
A
114 126Right-handed alpha
Helix 5
AA5
A
188 192Right-handed 310
Helix 6
AA6
A
209 214Right-handed alpha
Helix 7
AA7
A
217 227Right-handed alpha
Helix 8
AA8
A
230 247Right-handed alpha
Helix 9
AA9
A
253 262Right-handed alpha
Helix 10
AB1
A
266 274Right-handed alpha
Helix 11
AB2
B
53 60Right-handed 310
Helix 12
AB3
B
82 88Right-handed 310
Helix 13
AB4
B
91 106Right-handed alpha
Helix 14
AB5
B
114 126Right-handed alpha
Helix 15
AB6
B
188 192Right-handed 310
Helix 16
AB7
B
209 214Right-handed alpha
Helix 17
AB8
B
217 227Right-handed alpha
Helix 18
AB9
B
230 247Right-handed alpha
Helix 19
AC1
B
253 262Right-handed alpha
Helix 20
AC2
B
267 271Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6AE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 51first strand
Strand 2
A
285 292anti-parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
154 159anti-parallel
Strand 5
A
162 166anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
131 139anti-parallel
Strand 4
A
144 150anti-parallel
Strand 5
A
193 198anti-parallel
Strand 6
B
193 198anti-parallel
Strand 7
B
144 150anti-parallel
Strand 8
B
131 139anti-parallel
Strand 9
B
74 80anti-parallel
Strand 10
B
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
131 139anti-parallel
Strand 3
A
144 150anti-parallel
Strand 4
A
193 198anti-parallel
Strand 5
B
193 198anti-parallel
Strand 6
B
144 150anti-parallel
Strand 7
B
131 139anti-parallel
Strand 8
B
180 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 51first strand
Strand 2
B
285 292anti-parallel
Strand 3
B
204 208anti-parallel
Strand 4
B
154 159anti-parallel
Strand 5
B
162 166anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
176 177anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il