Analysis of interatomic Contacts of Structural Units in PDB entry:
6AEB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AEB entry

There are 8 chains in PDB entry 6AEB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 3	U 97
C	C 1	T 25
D	A 1	G 11
B	LYS 4	GLY 1366
E	A 3	U 97
G	C 1	T 25
H	A 1	G 11
F	LYS 4	GLY 1366

There are133 helices in PDB entry 6AEB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	59	92	Right-handed alpha
Helix 2	AA2	B	96	103	Right-handed alpha
Helix 3	AA3	B	122	132	Right-handed alpha
Helix 4	AA4	B	134	145	Right-handed alpha
Helix 5	AA5	B	150	164	Right-handed alpha
Helix 6	AA6	B	180	196	Right-handed alpha
Helix 7	AA7	B	207	213	Right-handed alpha
Helix 8	AA8	B	217	227	Right-handed alpha
Helix 9	AA9	B	236	246	Right-handed alpha
Helix 10	AB1	B	270	283	Right-handed alpha
Helix 11	AB2	B	284	287	Right-handed 310
Helix 12	AB3	B	288	304	Right-handed alpha
Helix 13	AB4	B	315	341	Right-handed alpha
Helix 14	AB5	B	346	352	Right-handed alpha
Helix 15	AB6	B	358	364	Right-handed alpha
Helix 16	AB7	B	368	383	Right-handed alpha
Helix 17	AB8	B	386	395	Right-handed alpha
Helix 18	AB9	B	405	410	Right-handed 310
Helix 19	AC1	B	411	427	Right-handed alpha
Helix 20	AC2	B	430	435	Right-handed alpha
Helix 21	AC3	B	436	446	Right-handed alpha
Helix 22	AC4	B	477	482	Right-handed alpha
Helix 23	AC5	B	485	496	Right-handed alpha
Helix 24	AC6	B	512	525	Right-handed alpha
Helix 25	AC7	B	541	552	Right-handed alpha
Helix 26	AC8	B	560	568	Right-handed alpha
Helix 27	AC9	B	591	602	Right-handed alpha
Helix 28	AD1	B	603	609	Right-handed alpha
Helix 29	AD2	B	612	626	Right-handed alpha
Helix 30	AD3	B	628	637	Right-handed alpha
Helix 31	AD4	B	638	640	Right-handed 310
Helix 32	AD5	B	644	652	Right-handed alpha
Helix 33	AD6	B	663	669	Right-handed alpha
Helix 34	AD7	B	678	685	Right-handed alpha
Helix 35	AD8	B	692	697	Right-handed alpha
Helix 36	AD9	B	704	710	Right-handed alpha
Helix 37	AE1	B	720	726	Right-handed alpha
Helix 38	AE2	B	730	751	Right-handed alpha
Helix 39	AE3	B	778	792	Right-handed alpha
Helix 40	AE4	B	794	799	Right-handed alpha
Helix 41	AE5	B	808	817	Right-handed alpha
Helix 42	AE6	B	829	833	Right-handed 310
Helix 43	AE7	B	851	853	Right-handed 310
Helix 44	AE8	B	872	889	Right-handed alpha
Helix 45	AE9	B	893	901	Right-handed alpha
Helix 46	AF1	B	902	906	Right-handed 310
Helix 47	AF2	B	911	919	Right-handed alpha
Helix 48	AF3	B	925	940	Right-handed alpha
Helix 49	AF4	B	960	970	Right-handed alpha
Helix 50	AF5	B	980	1001	Right-handed alpha
Helix 51	AF6	B	1004	1009	Right-handed alpha
Helix 52	AF7	B	1032	1041	Right-handed alpha
Helix 53	AF8	B	1042	1047	Right-handed 310
Helix 54	AF9	B	1078	1087	Right-handed alpha
Helix 55	AG1	B	1127	1132	Right-handed alpha
Helix 56	AG2	B	1170	1177	Right-handed alpha
Helix 57	AG3	B	1177	1184	Right-handed alpha
Helix 58	AG4	B	1191	1195	Right-handed 310
Helix 59	AG5	B	1207	1209	Right-handed 310
Helix 60	AG6	B	1229	1241	Right-handed alpha
Helix 61	AG7	B	1251	1262	Right-handed alpha
Helix 62	AG8	B	1264	1281	Right-handed alpha
Helix 63	AG9	B	1283	1297	Right-handed alpha
Helix 64	AH1	B	1301	1311	Right-handed alpha
Helix 65	AH2	B	1312	1316	Right-handed 310
Helix 66	AH3	B	1339	1344	Right-handed 310
Helix 67	AH4	F	59	92	Right-handed alpha
Helix 68	AH5	F	96	103	Right-handed alpha
Helix 69	AH6	F	107	111	Right-handed 310
Helix 70	AH7	F	122	132	Right-handed alpha
Helix 71	AH8	F	134	145	Right-handed alpha
Helix 72	AH9	F	150	164	Right-handed alpha
Helix 73	AI1	F	180	196	Right-handed alpha
Helix 74	AI2	F	207	213	Right-handed alpha
Helix 75	AI3	F	217	227	Right-handed alpha
Helix 76	AI4	F	236	247	Right-handed alpha
Helix 77	AI5	F	252	257	Right-handed alpha
Helix 78	AI6	F	270	283	Right-handed alpha
Helix 79	AI7	F	286	306	Right-handed alpha
Helix 80	AI8	F	315	341	Right-handed alpha
Helix 81	AI9	F	343	352	Right-handed alpha
Helix 82	AJ1	F	358	364	Right-handed alpha
Helix 83	AJ2	F	368	383	Right-handed alpha
Helix 84	AJ3	F	386	395	Right-handed alpha
Helix 85	AJ4	F	405	410	Right-handed 310
Helix 86	AJ5	F	411	427	Right-handed alpha
Helix 87	AJ6	F	430	446	Right-handed alpha
Helix 88	AJ7	F	477	482	Right-handed alpha
Helix 89	AJ8	F	485	494	Right-handed alpha
Helix 90	AJ9	F	512	526	Right-handed alpha
Helix 91	AK1	F	541	552	Right-handed alpha
Helix 92	AK2	F	560	568	Right-handed alpha
Helix 93	AK3	F	591	602	Right-handed alpha
Helix 94	AK4	F	603	609	Right-handed alpha
Helix 95	AK5	F	612	626	Right-handed alpha
Helix 96	AK6	F	628	637	Right-handed alpha
Helix 97	AK7	F	638	641	Right-handed 310
Helix 98	AK8	F	644	653	Right-handed alpha
Helix 99	AK9	F	663	669	Right-handed alpha
Helix 100	AL1	F	678	685	Right-handed alpha
Helix 101	AL2	F	692	697	Right-handed alpha
Helix 102	AL3	F	704	709	Right-handed alpha
Helix 103	AL4	F	720	726	Right-handed alpha
Helix 104	AL5	F	730	751	Right-handed alpha
Helix 105	AL6	F	778	792	Right-handed alpha
Helix 106	AL7	F	794	799	Right-handed alpha
Helix 107	AL8	F	804	807	Right-handed 310
Helix 108	AL9	F	808	817	Right-handed alpha
Helix 109	AM1	F	829	836	Right-handed 310
Helix 110	AM2	F	851	853	Right-handed 310
Helix 111	AM3	F	872	888	Right-handed alpha
Helix 112	AM4	F	893	902	Right-handed alpha
Helix 113	AM5	F	903	906	Right-handed 310
Helix 114	AM6	F	909	919	Right-handed alpha
Helix 115	AM7	F	925	939	Right-handed alpha
Helix 116	AM8	F	959	969	Right-handed alpha
Helix 117	AM9	F	975	979	Right-handed 310
Helix 118	AN1	F	980	1001	Right-handed alpha
Helix 119	AN2	F	1002	1005	Right-handed 310
Helix 120	AN3	F	1032	1041	Right-handed alpha
Helix 121	AN4	F	1078	1087	Right-handed alpha
Helix 122	AN5	F	1127	1132	Right-handed alpha
Helix 123	AN6	F	1170	1177	Right-handed alpha
Helix 124	AN7	F	1177	1186	Right-handed alpha
Helix 125	AN8	F	1191	1195	Right-handed 310
Helix 126	AN9	F	1207	1209	Right-handed 310
Helix 127	AO1	F	1229	1241	Right-handed alpha
Helix 128	AO2	F	1251	1262	Right-handed alpha
Helix 129	AO3	F	1264	1278	Right-handed alpha
Helix 130	AO4	F	1283	1295	Right-handed alpha
Helix 131	AO5	F	1301	1312	Right-handed alpha
Helix 132	AO6	F	1313	1316	Right-handed 310
Helix 133	AO7	F	1339	1343	Right-handed 310

There are 21 sheets in PDB entry 6AEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	958	first strand
Strand 2	B	758	763	parallel
Strand 3	B	5	11	parallel
Strand 4	B	15	22	anti-parallel
Strand 5	B	48	52	anti-parallel
Strand 6	B	1093	1096	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	42	46	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	499	first strand
Strand 2	B	502	506	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	528	530	anti-parallel
Strand 3	B	579	581	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	837	840	first strand
Strand 2	B	855	858	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	942	943	first strand
Strand 2	B	949	950	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1049	1052	first strand
Strand 2	B	1056	1059	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1063	1065	first strand
Strand 2	B	1072	1075	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1121	first strand
Strand 2	B	1133	1134	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1156	1167	first strand
Strand 2	B	1139	1151	anti-parallel
Strand 3	B	1196	1198	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1219	1222	first strand
Strand 2	B	1211	1216	anti-parallel
Strand 3	B	1203	1205	anti-parallel
Strand 4	B	1346	1350	anti-parallel
Strand 5	B	1357	1361	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1324	1325	first strand
Strand 2	B	1330	1331	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	954	957	first strand
Strand 2	F	758	763	parallel
Strand 3	F	5	11	parallel
Strand 4	F	16	22	anti-parallel
Strand 5	F	48	52	anti-parallel
Strand 6	F	1093	1096	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	46	first strand
Strand 2	F	29	36	anti-parallel
Strand 3	F	1357	1361	parallel
Strand 4	F	1346	1350	anti-parallel
Strand 5	F	1203	1205	anti-parallel
Strand 6	F	1211	1214	anti-parallel
Strand 7	F	1220	1222	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	498	499	first strand
Strand 2	F	502	506	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	538	539	first strand
Strand 2	F	528	530	anti-parallel
Strand 3	F	579	581	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	837	840	first strand
Strand 2	F	855	858	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1049	1052	first strand
Strand 2	F	1056	1059	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1063	1065	first strand
Strand 2	F	1072	1075	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1156	1167	first strand
Strand 2	F	1139	1151	anti-parallel
Strand 3	F	1196	1198	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1324	1325	first strand
Strand 2	F	1330	1331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AEB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AEB