Analysis of interatomic Contacts of Structural Units in PDB entry:
6AEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AEE entry

There are 8 chains in PDB entry 6AEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLN 276
B	MET 1	MET 99
C	ARG 1	LEU 9
D	SER 2	GLN 276
E	MET 1	MET 99
F	ARG 1	LEU 9
G	HIS 2	HIS 396
H	HIS 2	HIS 396

There are 20 helices in PDB entry 6AEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	56	85	Right-handed alpha
Helix 3	AA3	A	137	151	Right-handed alpha
Helix 4	AA4	A	152	162	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	A	252	255	Right-handed 310
Helix 8	AA8	D	49	53	Right-handed 310
Helix 9	AA9	D	56	86	Right-handed alpha
Helix 10	AB1	D	139	151	Right-handed alpha
Helix 11	AB2	D	152	162	Right-handed alpha
Helix 12	AB3	D	162	175	Right-handed alpha
Helix 13	AB4	D	175	180	Right-handed alpha
Helix 14	AB5	D	253	255	Right-handed 310
Helix 15	AB6	G	46	50	Right-handed 310
Helix 16	AB7	G	51	56	Right-handed alpha
Helix 17	AB8	H	44	48	Right-handed 310
Helix 18	AB9	H	51	58	Right-handed alpha
Helix 19	AC1	H	66	70	Right-handed 310
Helix 20	AC2	H	265	269	Right-handed 310

There are 30 sheets in PDB entry 6AEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	122	126	anti-parallel
Strand 8	A	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	195	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	195	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	219	first strand
Strand 2	A	257	262	anti-parallel
Strand 3	A	270	272	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	35	41	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	31	37	anti-parallel
Strand 3	D	21	28	anti-parallel
Strand 4	D	4	12	anti-parallel
Strand 5	D	94	103	anti-parallel
Strand 6	D	109	118	anti-parallel
Strand 7	D	122	126	anti-parallel
Strand 8	D	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	195	first strand
Strand 2	D	198	208	anti-parallel
Strand 3	D	241	250	anti-parallel
Strand 4	D	228	230	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	195	first strand
Strand 2	D	198	208	anti-parallel
Strand 3	D	241	250	anti-parallel
Strand 4	D	234	235	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	219	first strand
Strand 2	D	257	262	anti-parallel
Strand 3	D	270	272	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	21	30	anti-parallel
Strand 3	E	62	70	anti-parallel
Strand 4	E	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	21	30	anti-parallel
Strand 3	E	62	70	anti-parallel
Strand 4	E	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	35	41	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	11	first strand
Strand 2	G	22	27	anti-parallel
Strand 3	G	59	62	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	91	96	parallel
Strand 3	G	71	77	anti-parallel
Strand 4	G	35	39	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	107	first strand
Strand 2	G	119	123	anti-parallel
Strand 3	G	156	160	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	136	first strand
Strand 2	G	171	177	anti-parallel
Strand 3	G	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	208	first strand
Strand 2	G	219	224	anti-parallel
Strand 3	G	257	261	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	212	213	first strand
Strand 2	G	291	295	parallel
Strand 3	G	270	277	anti-parallel
Strand 4	G	231	236	anti-parallel
Strand 5	G	244	247	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	303	307	first strand
Strand 2	G	318	325	anti-parallel
Strand 3	G	354	363	anti-parallel
Strand 4	G	349	351	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	347	first strand
Strand 2	G	331	336	anti-parallel
Strand 3	G	371	377	anti-parallel
Strand 4	G	392	393	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	11	first strand
Strand 2	H	22	27	anti-parallel
Strand 3	H	59	62	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	17	first strand
Strand 2	H	91	96	parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	36	39	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	107	first strand
Strand 2	H	118	123	anti-parallel
Strand 3	H	156	161	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	136	first strand
Strand 2	H	171	177	anti-parallel
Strand 3	H	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	208	first strand
Strand 2	H	220	224	anti-parallel
Strand 3	H	257	258	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	245	247	first strand
Strand 2	H	231	236	anti-parallel
Strand 3	H	270	277	anti-parallel
Strand 4	H	291	293	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	303	306	first strand
Strand 2	H	318	325	anti-parallel
Strand 3	H	354	363	anti-parallel
Strand 4	H	349	351	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	345	347	first strand
Strand 2	H	331	336	anti-parallel
Strand 3	H	370	377	anti-parallel
Strand 4	H	392	394	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AEE