Analysis of interatomic Contacts of Structural Units in PDB entry:
6AEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AEF entry

There are 2 chains in PDB entry 6AEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 2GLY 459
A
 PHE 2TYR 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6AEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
8 10Right-handed 310
Helix 2
AA2
B
23 32Right-handed alpha
Helix 3
AA3
B
41 57Right-handed alpha
Helix 4
AA4
B
76 91Right-handed alpha
Helix 5
AA5
B
92 94Right-handed 310
Helix 6
AA6
B
113 117Right-handed 310
Helix 7
AA7
B
128 137Right-handed alpha
Helix 8
AA8
B
167 169Right-handed 310
Helix 9
AA9
B
170 171Right-handed 310
Helix 10
AB1
B
172 181Right-handed alpha
Helix 11
AB2
B
181 190Right-handed alpha
Helix 12
AB3
B
202 216Right-handed alpha
Helix 13
AB4
B
221 234Right-handed alpha
Helix 14
AB5
B
264 277Right-handed alpha
Helix 15
AB6
B
280 298Right-handed alpha
Helix 16
AB7
B
313 318Right-handed alpha
Helix 17
AB8
B
337 353Right-handed alpha
Helix 18
AB9
B
354 356Right-handed 310
Helix 19
AC1
B
359 367Right-handed alpha
Helix 20
AC2
B
368 372Right-handed 310
Helix 21
AC3
B
391 398Right-handed alpha
Helix 22
AC4
B
435 458Right-handed alpha
Helix 23
AC5
A
8 10Right-handed 310
Helix 24
AC6
A
23 32Right-handed alpha
Helix 25
AC7
A
41 57Right-handed alpha
Helix 26
AC8
A
76 91Right-handed alpha
Helix 27
AC9
A
92 94Right-handed 310
Helix 28
AD1
A
113 117Right-handed 310
Helix 29
AD2
A
128 137Right-handed alpha
Helix 30
AD3
A
167 169Right-handed 310
Helix 31
AD4
A
170 171Right-handed 310
Helix 32
AD5
A
172 181Right-handed alpha
Helix 33
AD6
A
181 190Right-handed alpha
Helix 34
AD7
A
202 216Right-handed alpha
Helix 35
AD8
A
221 233Right-handed alpha
Helix 36
AD9
A
264 278Right-handed alpha
Helix 37
AE1
A
280 298Right-handed alpha
Helix 38
AE2
A
313 318Right-handed alpha
Helix 39
AE3
A
337 353Right-handed alpha
Helix 40
AE4
A
354 356Right-handed 310
Helix 41
AE5
A
359 367Right-handed alpha
Helix 42
AE6
A
368 372Right-handed 310
Helix 43
AE7
A
392 398Right-handed alpha
Helix 44
AE8
A
435 458Right-handed alpha
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There are 6 sheets in PDB entry 6AEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
404 407parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
157 165anti-parallel
Strand 5
B
147 153anti-parallel
Strand 6
B
16 22anti-parallel
Strand 7
B
119 123anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
96 100anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 263first strand
Strand 2
B
425 433anti-parallel
Strand 3
B
415 421anti-parallel
Strand 4
B
381 387parallel
Strand 5
B
301 309parallel
Strand 6
B
324 332anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
404 407parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
157 165anti-parallel
Strand 5
A
147 153anti-parallel
Strand 6
A
16 22anti-parallel
Strand 7
A
119 123anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
96 100anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 263first strand
Strand 2
A
425 433anti-parallel
Strand 3
A
415 421anti-parallel
Strand 4
A
381 387parallel
Strand 5
A
301 309parallel
Strand 6
A
324 332anti-parallel
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