Analysis of interatomic Contacts of Structural Units in PDB entry:
6AEO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AEO entry

There are 2 chains in PDB entry 6AEO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ARG 546
B	LYS 3	ARG 546

There are 46 helices in PDB entry 6AEO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	34	Right-handed alpha
Helix 2	AA2	A	44	56	Right-handed alpha
Helix 3	AA3	A	66	75	Right-handed alpha
Helix 4	AA4	A	84	89	Right-handed alpha
Helix 5	AA5	A	92	98	Right-handed alpha
Helix 6	AA6	A	130	132	Right-handed 310
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	155	166	Right-handed alpha
Helix 9	AA9	A	187	203	Right-handed alpha
Helix 10	AB1	A	211	221	Right-handed alpha
Helix 11	AB2	A	230	232	Right-handed 310
Helix 12	AB3	A	233	241	Right-handed alpha
Helix 13	AB4	A	274	285	Right-handed alpha
Helix 14	AB5	A	288	299	Right-handed alpha
Helix 15	AB6	A	306	314	Right-handed alpha
Helix 16	AB7	A	316	329	Right-handed alpha
Helix 17	AB8	A	337	354	Right-handed alpha
Helix 18	AB9	A	358	383	Right-handed alpha
Helix 19	AC1	A	404	410	Right-handed alpha
Helix 20	AC2	A	441	448	Right-handed alpha
Helix 21	AC3	A	448	458	Right-handed alpha
Helix 22	AC4	A	480	502	Right-handed alpha
Helix 23	AC5	A	527	535	Right-handed alpha
Helix 24	AC6	B	18	34	Right-handed alpha
Helix 25	AC7	B	44	54	Right-handed alpha
Helix 26	AC8	B	68	75	Right-handed alpha
Helix 27	AC9	B	84	89	Right-handed alpha
Helix 28	AD1	B	92	99	Right-handed alpha
Helix 29	AD2	B	130	132	Right-handed 310
Helix 30	AD3	B	133	144	Right-handed alpha
Helix 31	AD4	B	155	166	Right-handed alpha
Helix 32	AD5	B	187	203	Right-handed alpha
Helix 33	AD6	B	211	221	Right-handed alpha
Helix 34	AD7	B	230	232	Right-handed 310
Helix 35	AD8	B	233	241	Right-handed alpha
Helix 36	AD9	B	274	285	Right-handed alpha
Helix 37	AE1	B	288	299	Right-handed alpha
Helix 38	AE2	B	306	314	Right-handed alpha
Helix 39	AE3	B	316	329	Right-handed alpha
Helix 40	AE4	B	337	354	Right-handed alpha
Helix 41	AE5	B	358	382	Right-handed alpha
Helix 42	AE6	B	404	410	Right-handed alpha
Helix 43	AE7	B	441	447	Right-handed alpha
Helix 44	AE8	B	448	458	Right-handed alpha
Helix 45	AE9	B	481	502	Right-handed alpha
Helix 46	AF1	B	527	535	Right-handed alpha

There are 13 sheets in PDB entry 6AEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	9	13	parallel
Strand 3	A	61	65	parallel
Strand 4	A	260	268	anti-parallel
Strand 5	A	108	113	anti-parallel
Strand 6	A	303	304	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	9	13	parallel
Strand 3	A	61	65	parallel
Strand 4	A	260	268	anti-parallel
Strand 5	A	330	331	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	104	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	224	229	parallel
Strand 3	A	116	120	anti-parallel
Strand 4	A	244	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	177	184	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	255	256	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	419	first strand
Strand 2	A	422	428	anti-parallel
Strand 3	A	536	542	anti-parallel
Strand 4	A	463	469	anti-parallel
Strand 5	A	511	517	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	9	12	parallel
Strand 3	B	61	65	parallel
Strand 4	B	260	268	anti-parallel
Strand 5	B	108	113	anti-parallel
Strand 6	B	303	304	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	9	12	parallel
Strand 3	B	61	65	parallel
Strand 4	B	260	268	anti-parallel
Strand 5	B	330	331	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	104	105	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	224	229	parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	244	247	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	177	179	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	419	first strand
Strand 2	B	422	428	anti-parallel
Strand 3	B	536	542	anti-parallel
Strand 4	B	463	469	anti-parallel
Strand 5	B	511	515	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AEO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AEO