Analysis of interatomic Contacts of Structural Units in PDB entry:
6AF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AF3 entry

There are 8 chains in PDB entry 6AF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 114
B
 ASN 3GLU 93
C
 MSE 1LYS 113
D
 LYS 2GLU 93
E
 MSE 1GLY 116
F
 ASN 3LEU 92
G
 MSE 1LEU 117
H
 SER 8GLU 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 6AF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
28 49Right-handed alpha
Helix 3
AA3
A
50 53Right-handed 310
Helix 4
AA4
A
98 113Right-handed alpha
Helix 5
AA5
B
10 18Right-handed alpha
Helix 6
AA6
B
19 42Right-handed alpha
Helix 7
AA7
B
46 55Right-handed alpha
Helix 8
AA8
B
57 66Right-handed alpha
Helix 9
AA9
B
72 83Right-handed alpha
Helix 10
AB1
C
14 24Right-handed alpha
Helix 11
AB2
C
28 49Right-handed alpha
Helix 12
AB3
C
50 53Right-handed 310
Helix 13
AB4
C
98 111Right-handed alpha
Helix 14
AB5
D
10 18Right-handed alpha
Helix 15
AB6
D
19 42Right-handed alpha
Helix 16
AB7
D
47 55Right-handed alpha
Helix 17
AB8
D
57 67Right-handed alpha
Helix 18
AB9
D
72 83Right-handed alpha
Helix 19
AC1
E
17 26Right-handed alpha
Helix 20
AC2
E
29 49Right-handed alpha
Helix 21
AC3
E
50 53Right-handed 310
Helix 22
AC4
E
101 113Right-handed alpha
Helix 23
AC5
F
9 18Right-handed alpha
Helix 24
AC6
F
19 44Right-handed alpha
Helix 25
AC7
F
46 55Right-handed alpha
Helix 26
AC8
F
57 63Right-handed alpha
Helix 27
AC9
F
72 82Right-handed alpha
Helix 28
AD1
G
15 19Right-handed 310
Helix 29
AD2
G
32 49Right-handed alpha
Helix 30
AD3
G
113 117Right-handed 310
Helix 31
AD4
H
9 18Right-handed alpha
Helix 32
AD5
H
19 41Right-handed alpha
Helix 33
AD6
H
47 55Right-handed alpha
Helix 34
AD7
H
57 66Right-handed alpha
Helix 35
AD8
H
72 82Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6AF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
72 79anti-parallel
Strand 4
A
83 91anti-parallel
Strand 5
A
4 7parallel
Strand 6
B
6 9anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 91first strand
Strand 2
H
85 91anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
64 67anti-parallel
Strand 3
C
72 78anti-parallel
Strand 4
C
83 91anti-parallel
Strand 5
C
3 7parallel
Strand 6
D
6 9anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 91first strand
Strand 2
F
85 91anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 6first strand
Strand 2
E
85 91parallel
Strand 3
E
72 77anti-parallel
Strand 4
E
64 67anti-parallel
Strand 5
E
57 61anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il